A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 6E80  PDB ID: 6E80 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18A_A21:U27_A0.3961.7620.521-2.57626.519-36.811
12A_C3:G34_A1.877-0.0710.109-8.961-20.0712.672
14A_C5:G32_A0.865-0.183-0.41911.186-6.786.188
11A_G2:C35_A0.208-0.416-0.694-15.345-13.461.181
13A_G4:C33_A-0.223-0.308-0.160.256-13.306-4.664
15A_G9:C18_A-0.335-0.094-0.936-26.944-13.6999.271
16A_G13:G16_A1.4783.207-0.065-5.5743.967-90.221
17A_G20:C28_A0.5330.443-0.56-30.98417.36123.168
110A_G22:G25_A1.7273.542-0.061-14.116-4.647-92.757
19A_G23:G26_A1.9453.605-0.638-2.60113.976-84.069

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.