A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 6E80  PDB ID: 6E80 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16AA_A21G23:G26U27_AA-3.3450.6642.11890.689148.531-121.359-0.839-1.3642.423-74.59245.544-177.077
12AA_C3G4:C33G34_AA-0.689-2.3323.0040.87414.24720.668-8.3151.7681.14834.85-2.13725.074
11AA_G2C3:G34C35_AA-0.747-2.0043.284-5.5983.65736.748-3.610.4333.1535.7428.79137.331
13AA_G4C5:G32C33_AA0.594-1.163.0160.42.12336.48-2.117-0.8972.9533.387-0.63936.542
14AA_G9G13:G16C18_AA4.316-5.0850.832-67.756-138.877116.769-2.193-2.3522.092-71.09434.686166.725
15AA_G20A21:U27C28_AA-2.3610.2582.936-3.80125.7739.998-5.8713.9571.62168.61810.12127.873
17AA_G23G22:G25G26_AA-0.0061.582-3.344-5.5130.336-35.177-2.5380.812-3.321-0.552-9.052-35.595

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.