A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Feb-2020 number of released structures: 10626
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NDB ID: 6ED9  PDB ID: 6ED9 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19A_DA9:DT10_B0.2010.009-0.159.444-17.051-0.971
15A_DC5:DG14_B0.438-0.1190.04-1.288-5.081-1.704
12A_DG2:DC17_B-0.406-0.091-0.097-11.812-14.2930.309
13A_DG3:DC16_B-0.52-0.1380.066-0.756-10.445-0.141
14A_DG4:DC15_B-0.557-0.156-0.087-10.817-12.4930.461
16A_DG6:DC13_B-0.379-0.0940.018-4.867-12.9920.778
17A_DG7:DC12_B-0.469-0.1270.0372.84-0.979-0.15
18A_DG8:DC11_B-0.344-0.10.0362.492-13.0510.23
11A_DT1:DA18_B-0.193-0.014-0.469-1.531-13.813-0.851

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.