A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Feb-2020 number of released structures: 10626
Search for released structures

NDB ID: 6ED9  PDB ID: 6ED9 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15AA_DC5DG6:DC13DG14_BB0.882-1.4993.579-0.4940.1224.381-3.589-2.2573.5540.2831.16924.386
12AA_DG2DG3:DC16DC17_BB0.127-1.7223.044-1.9466.39128.491-4.619-0.622.5912.7643.88629.248
13AA_DG3DG4:DC15DC16_BB-0.332-1.2573.4870.2455.56535.872-2.8260.5693.2598.968-0.39536.288
14AA_DG4DC5:DG14DC15_BB0.277-0.663.0990.237.07633.764-2.133-0.4352.90712.019-0.3934.477
16AA_DG6DG7:DC12DC13_BB-1.041-1.2793.09-0.6380.29823.024-3.3012.3943.10.7461.59823.035
17AA_DG7DG8:DC11DC12_BB-1.2730.223.305-3.4865.31736.929-0.3781.513.4058.3185.45437.453
18AA_DG8DA9:DT10DC11_BB-0.087-0.5723.274.5262.53133.776-1.3710.8583.1824.324-7.73234.16
11AA_DT1DG2:DC17DA18_BB0.427-1.0533.637-5.88413.07131.165-3.938-1.6932.85622.87410.29734.229

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.