A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6EDB  PDB ID: 6EDB 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT21_D-0.330.5550.189-7.495-27.3173.521
19C_DA10:DT14_D0.161-0.115-0.3151.456-13.344-0.866
113C_DA14:DT10_D0.4971.0320.59-1.395-21.6728.709
114C_DA15:DT9_D0.002-0.094-0.1451.238-15.509-4.541
115C_DA16:DT8_D0.880.4440.173-2.851-17.7878.003
117C_DA18:DT6_D0.2920.070.52210.121-6.4541.61
118C_DA19:DT5_D0.0220.5541.4-17.39824.048-6.904
14C_DC5:DG19_D-0.0520.743-0.0132.764-9.45815.5
15C_DC6:DG18_D0.033-0.0170.426-1.884-6.6120.311
111C_DC12:DG12_D0.31-0.272-0.5074.251-14.1564.958
116C_DC17:DG7_D0.108-0.0710.628-0.717-8.3057.456
11C_DG2:DC22_D-0.228-0.1820.6281.003-15.803-0.188
16C_DG7:DC17_D-0.493-0.1710.5430.817-6.5934.424
17C_DG8:DC16_D-0.096-0.0610.5698.158-9.3326.673
18C_DG9:DC15_D-1.0620.4360.2576.91-9.5922.313
119C_DG21:DC3_D-0.1750.154-0.563-2.538-10.34719.46
13C_DT4:DA20_D-0.219-0.298-0.298-6.63-7.1064.561
110C_DT11:DA13_D0.254-0.136-0.0051.369-10.9020.843
112C_DT13:DA11_D-0.185-0.35-0.13-10.838-20.6623.31

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.