A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6EDB  PDB ID: 6EDB 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA3DT4:DA20DT21_DD0.5360.7453.4110.1484.65230.7120.445-0.9713.4858.721-0.27731.054
19CC_DA10DT11:DA13DT14_DD0.602-0.483.347-2.859-5.20733.670.029-1.4893.321-8.9034.88934.175
113CC_DA14DA15:DT9DT10_DD-1.3450.7153.5332.3626.33928.934-0.0543.1643.48812.472-4.64829.698
114CC_DA15DA16:DT8DT9_DD0.3180.2393.349-1.6872.69639.5490.03-0.673.3413.9762.48939.672
115CC_DA16DC17:DG7DT8_DD0.074-0.5343.134-4.37.24832.14-2.077-0.8072.91412.8187.60533.198
117CC_DA18DA19:DT5DT6_DD-0.485-0.1415.135-9.70444.63632.027-4.485-0.4193.02555.47912.06255.291
118CC_DA19DG21:DC3DT5_DD-1.1820.9557.30910.1637.17940.209-4.2322.7165.83643.879-11.99155.14
14CC_DC5DC6:DG18DG19_DD-0.9420.3123.29-5.4726.40537.886-0.340.7273.3959.7198.30338.778
15CC_DC6DG7:DC17DG18_DD0.2210.8873.2770.8162.17938.4031.072-0.2333.3243.308-1.23938.471
111CC_DC12DT13:DA11DG12_DD0.0550.9523.843.078-3.61140.131.850.3223.738-5.24-4.46740.398
116CC_DC17DA18:DT6DG7_DD-0.3820.3093.0590.80.45434.340.4570.7633.0530.768-1.35534.351
11CC_DG2DA3:DT21DC22_DD-0.7180.9133.805-4.1060.96831.4971.4580.4223.8911.7747.52231.771
16CC_DG7DG8:DC16DC17_DD0.280.3993.182-1.5458.95932.308-0.764-0.7373.1615.7152.71133.53
17CC_DG8DG9:DC15DC16_DD-0.9780.2873.246-1.679-0.88734.040.631.4033.281-1.5132.86534.092
18CC_DG9DA10:DT14DC15_DD-0.3-0.6743.3022.6243.46440.984-1.3310.7093.2134.93-3.73541.203
13CC_DT4DC5:DG19DA20_DD0.7190.4393.103-0.9076.53230.377-0.383-1.5093.10512.2841.70531.069
110CC_DT11DC12:DG12DA13_DD-0.436-0.5953.1285.0980.9737.345-1.0391.33.0291.505-7.91537.692
112CC_DT13DA14:DT10DA11_DD1.7191.5642.966-0.629-5.64641.2182.724-2.4792.713-7.9740.88841.591

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.