6EDB: Base Pair Morphology Step Parameters

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NDB ID: 6EDB PDB ID: 6EDB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA3DT4:DA20DT21_DD	0.536	0.745	3.411	0.148	4.652	30.712	0.445	-0.971	3.485	8.721	-0.277	31.054
1	9	CC_DA10DT11:DA13DT14_DD	0.602	-0.48	3.347	-2.859	-5.207	33.67	0.029	-1.489	3.321	-8.903	4.889	34.175
1	13	CC_DA14DA15:DT9DT10_DD	-1.345	0.715	3.533	2.362	6.339	28.934	-0.054	3.164	3.488	12.472	-4.648	29.698
1	14	CC_DA15DA16:DT8DT9_DD	0.318	0.239	3.349	-1.687	2.696	39.549	0.03	-0.67	3.341	3.976	2.489	39.672
1	15	CC_DA16DC17:DG7DT8_DD	0.074	-0.534	3.134	-4.3	7.248	32.14	-2.077	-0.807	2.914	12.818	7.605	33.198
1	17	CC_DA18DA19:DT5DT6_DD	-0.485	-0.141	5.135	-9.704	44.636	32.027	-4.485	-0.419	3.025	55.479	12.062	55.291
1	18	CC_DA19DG21:DC3DT5_DD	-1.182	0.955	7.309	10.16	37.179	40.209	-4.232	2.716	5.836	43.879	-11.991	55.14
1	4	CC_DC5DC6:DG18DG19_DD	-0.942	0.312	3.29	-5.472	6.405	37.886	-0.34	0.727	3.395	9.719	8.303	38.778
1	5	CC_DC6DG7:DC17DG18_DD	0.221	0.887	3.277	0.816	2.179	38.403	1.072	-0.233	3.324	3.308	-1.239	38.471
1	11	CC_DC12DT13:DA11DG12_DD	0.055	0.952	3.84	3.078	-3.611	40.13	1.85	0.322	3.738	-5.24	-4.467	40.398
1	16	CC_DC17DA18:DT6DG7_DD	-0.382	0.309	3.059	0.8	0.454	34.34	0.457	0.763	3.053	0.768	-1.355	34.351
1	1	CC_DG2DA3:DT21DC22_DD	-0.718	0.913	3.805	-4.106	0.968	31.497	1.458	0.422	3.891	1.774	7.522	31.771
1	6	CC_DG7DG8:DC16DC17_DD	0.28	0.399	3.182	-1.545	8.959	32.308	-0.764	-0.737	3.16	15.715	2.711	33.53
1	7	CC_DG8DG9:DC15DC16_DD	-0.978	0.287	3.246	-1.679	-0.887	34.04	0.63	1.403	3.281	-1.513	2.865	34.092
1	8	CC_DG9DA10:DT14DC15_DD	-0.3	-0.674	3.302	2.624	3.464	40.984	-1.331	0.709	3.213	4.93	-3.735	41.203
1	3	CC_DT4DC5:DG19DA20_DD	0.719	0.439	3.103	-0.907	6.532	30.377	-0.383	-1.509	3.105	12.284	1.705	31.069
1	10	CC_DT11DC12:DG12DA13_DD	-0.436	-0.595	3.128	5.098	0.97	37.345	-1.039	1.3	3.029	1.505	-7.915	37.692
1	12	CC_DT13DA14:DT10DA11_DD	1.719	1.564	2.966	-0.629	-5.646	41.218	2.724	-2.479	2.713	-7.974	0.888	41.591

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.