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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID:
6EDB
PDB ID:
6EDB
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
2
CC_DA3DT4:DA20DT21_DD
0.536
0.745
3.411
0.148
4.652
30.712
0.445
-0.971
3.485
8.721
-0.277
31.054
1
9
CC_DA10DT11:DA13DT14_DD
0.602
-0.48
3.347
-2.859
-5.207
33.67
0.029
-1.489
3.321
-8.903
4.889
34.175
1
13
CC_DA14DA15:DT9DT10_DD
-1.345
0.715
3.533
2.362
6.339
28.934
-0.054
3.164
3.488
12.472
-4.648
29.698
1
14
CC_DA15DA16:DT8DT9_DD
0.318
0.239
3.349
-1.687
2.696
39.549
0.03
-0.67
3.341
3.976
2.489
39.672
1
15
CC_DA16DC17:DG7DT8_DD
0.074
-0.534
3.134
-4.3
7.248
32.14
-2.077
-0.807
2.914
12.818
7.605
33.198
1
17
CC_DA18DA19:DT5DT6_DD
-0.485
-0.141
5.135
-9.704
44.636
32.027
-4.485
-0.419
3.025
55.479
12.062
55.291
1
18
CC_DA19DG21:DC3DT5_DD
-1.182
0.955
7.309
10.16
37.179
40.209
-4.232
2.716
5.836
43.879
-11.991
55.14
1
4
CC_DC5DC6:DG18DG19_DD
-0.942
0.312
3.29
-5.472
6.405
37.886
-0.34
0.727
3.395
9.719
8.303
38.778
1
5
CC_DC6DG7:DC17DG18_DD
0.221
0.887
3.277
0.816
2.179
38.403
1.072
-0.233
3.324
3.308
-1.239
38.471
1
11
CC_DC12DT13:DA11DG12_DD
0.055
0.952
3.84
3.078
-3.611
40.13
1.85
0.322
3.738
-5.24
-4.467
40.398
1
16
CC_DC17DA18:DT6DG7_DD
-0.382
0.309
3.059
0.8
0.454
34.34
0.457
0.763
3.053
0.768
-1.355
34.351
1
1
CC_DG2DA3:DT21DC22_DD
-0.718
0.913
3.805
-4.106
0.968
31.497
1.458
0.422
3.891
1.774
7.522
31.771
1
6
CC_DG7DG8:DC16DC17_DD
0.28
0.399
3.182
-1.545
8.959
32.308
-0.764
-0.737
3.16
15.715
2.711
33.53
1
7
CC_DG8DG9:DC15DC16_DD
-0.978
0.287
3.246
-1.679
-0.887
34.04
0.63
1.403
3.281
-1.513
2.865
34.092
1
8
CC_DG9DA10:DT14DC15_DD
-0.3
-0.674
3.302
2.624
3.464
40.984
-1.331
0.709
3.213
4.93
-3.735
41.203
1
3
CC_DT4DC5:DG19DA20_DD
0.719
0.439
3.103
-0.907
6.532
30.377
-0.383
-1.509
3.105
12.284
1.705
31.069
1
10
CC_DT11DC12:DG12DA13_DD
-0.436
-0.595
3.128
5.098
0.97
37.345
-1.039
1.3
3.029
1.505
-7.915
37.692
1
12
CC_DT13DA14:DT10DA11_DD
1.719
1.564
2.966
-0.629
-5.646
41.218
2.724
-2.479
2.713
-7.974
0.888
41.591
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.