A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
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NDB ID: 6EDC  PDB ID: 6EDC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA3:DT16_C1.6640.170.325-15.581-18.72817.212
18B_DA10:DT9_C-0.188-0.285-0.2322.145-15.868-5.876
19B_DA11:DT8_C0.571-0.2340.0575.852-11.4640.339
111B_DA13:DT6_C-0.405-0.215-0.0750.615-20.4631.881
114B_DA16:DT3_C-0.178-0.1890.012.499-27.83417.628
115B_DA17:DT2_C1.293-0.1250.2111.102-42.03520.917
15B_DC7:DG12_C0.756-0.4020.2222.699-8.3193.905
16B_DC8:DG11_C0.160.2710.121.131-7.92912.573
112B_DC14:DG5_C0.0320.070.0398.941-25.6115.122
14B_DG6:DC13_C-0.634-0.261-0.438-17.616-12.1165.226
17B_DG9:DC10_C-0.377-0.280.37313.0320.9092.742
110B_DG12:DC7_C0.1910.0980.57119.791-19.37515.662
113B_DG15:DC4_C-0.732-0.5060.1316.947-23.84513.713
12B_DT4:DA15_C-1.2860.4831.024-4.166-36.62332.336
13B_DT5:DA14_C-0.5270.2170.69-12.539-31.86918.844

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.