A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
Search for released structures

NDB ID: 6EDC  PDB ID: 6EDC 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_DA3DT4:DA15DT16_CC-0.811-1.022.856-5.63711.2017.738-11.539-0.6411.03952.20726.27214.727
18BB_DA10DA11:DT8DT9_CC-0.1030.1853.174-3.0945.26242.208-0.262-0.1623.1747.2614.2742.628
19BB_DA11DG12:DC7DT8_CC0.9420.1532.991-1.41110.8925.048-2.167-2.3182.75923.7093.07327.314
111BB_DA13DC14:DG5DT6_CC0.4980.2133.1024.1865.29534.767-0.4-0.2273.1368.759-6.92535.396
114BB_DA16DA17:DT2DT3_CC0.2141.0753.4472.0268.37844.3760.586-0.0823.58910.969-2.65345.164
15BB_DC7DC8:DG11DG12_CC1.0530.6793.3187.75415.8429.756-1.585-0.443.4127.968-13.69134.488
16BB_DC8DG9:DC10DG11_CC-0.1030.7223.037-3.13413.59826.434-1.392-0.4453.03127.4396.32429.833
112BB_DC14DG15:DC4DG5_CC-0.1890.9433.327-3.36814.87430.047-1.024-0.2753.40826.646.03333.616
14BB_DG6DC7:DG12DC13_CC-0.0750.9342.877-5.0082.49236.8241.169-0.4752.9173.9187.87237.232
17BB_DG9DA10:DT9DC10_CC-1.1080.6163.752-0.6052.96739.8160.5081.5433.8024.3490.88639.926
110BB_DG12DA13:DT6DC7_CC-1.4950.1643.558-2.3833.64938.129-0.2541.9463.6415.5643.63338.368
113BB_DG15DA16:DT3DC4_CC0.210.6193.5430.3730.55137.3490.888-0.2743.5530.861-0.58337.355
12BB_DT4DT5:DA14DA15_CC-0.5021.3633.4191.3593.81441.6731.4850.8533.5075.346-1.90541.86
13BB_DT5DG6:DC13DA14_CC-0.0522.1953.7193.689-0.63143.7393.0040.4663.673-0.845-4.94143.891

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.