A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Nov-2019 number of released structures: 10455
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NDB ID: 6EKO  PDB ID: 6EKO 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19F_DA10:DT4_E0.087-0.290.1813.056-24.445-0.067
11F_DC1:DG13_E0.608-0.137-0.0599.147-16.2577.656
13F_DC3:DG11_E0.154-0.0970.262-1.203-12.233-0.859
15F_DC5:DG9_E0.022-0.080.574-28.87-8.6561.28
16F_DC6:DG8_E0.045-0.3140.005-10.69249.178-5.251
111F_DC12:DG2_E0.343-0.165-0.02316.219-10.7870.41
12F_DG2:DC12_E-0.489-0.0940.323-6.104-13.6281.475
17F_DG8:DC6_E-0.27-0.0280.00616.99647.4442.908
18F_DG9:DC5_E-0.378-0.1450.70331.058-5.250.374
110F_DG11:DC3_E-0.1550.0110.4958.806-7.886-0.932
112F_DG13:DC1_E-0.745-0.258-0.661-20.922-24.1256.984
14F_DT4:DA10_E-0.074-0.230.167-10.14-25.8053.596

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.