A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 12-Aug-2022 number of released structures: 12231
Search for released structures

NDB ID: 6ERF  PDB ID: 6ERF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16I_DA7:DT28_J-0.186-0.0580.261.913-14.3676.787
111I_DA12:DT23_J-0.159-0.1070.1071.014-11.1430.451
17I_DG8:DC27_J-0.389-0.0510.2031.491-15.5096.422
11I_DT2:DA33_J0.397-0.211.245-16.128-7.6942.696
12I_DT3:DA32_J0.197-0.1630.135-3.256-14.3472.743
13I_DT4:DA31_J0.202-0.1220.204-3.027-12.4392.598
14I_DT5:DA30_J0.154-0.0910.18-0.877-12.8493.804
15I_DT6:DA29_J0.145-0.070.1920.691-13.2555.193
18I_DT9:DA26_J0.071-0.0220.163-0.679-15.6385.544
19I_DT10:DA25_J0.127-0.1260.109-1.519-16.394.356
110I_DT11:DA24_J0.117-0.0770.145-2.832-13.171.724
112I_DT13:DA22_J0.06-0.1680.0612.988-11.969-0.818
115K_DA7:DT28_L-0.1450.0570.3141.598-15.60111.21
120K_DA12:DT23_L-0.165-0.0690.1590.285-10.242.071
116K_DG8:DC27_L-0.3630.0050.2731.406-16.2449.391
113K_DT5:DA30_L0.3460.0670.487-1.943-16.09810.987
114K_DT6:DA29_L0.2530.0770.356-0.643-15.37611.598
117K_DT9:DA26_L0.174-0.0020.289-1.852-15.7638.59
118K_DT10:DA25_L0.216-0.1110.247-2.98-16.1016.904
119K_DT11:DA24_L0.199-0.0490.227-4.17-12.4093.702
121K_DT13:DA22_L0.113-0.0960.1481.815-10.3030.704
122K_DT14:DA21_L0.078-0.1690.1134.23-11.56-0.852
126M_DA7:DT28_N-0.2030.0860.2582.066-15.2410.732
131M_DA12:DT23_N-0.199-0.0950.173-0.024-10.2413.444
127M_DG8:DC27_N-0.3980.0620.2251.765-16.4569.827
134M_DG15:DT20_N-0.181-0.2010.1583.711-13.149-2.529
123M_DT4:DA31_N0.115-0.0830.191-2.284-11.6443.893
124M_DT5:DA30_N0.1-0.0410.1560.091-13.9026.158
125M_DT6:DA29_N0.0960.0320.1490.737-14.2818.643
128M_DT9:DA26_N0.1370.0480.223-1.03-16.039.111
129M_DT10:DA25_N0.221-0.0780.213-2.247-15.8757.704
130M_DT11:DA24_N0.228-0.0480.247-3.602-12.1735.082
132M_DT13:DA22_N0.13-0.1110.1360.802-10.4991.456
133M_DT14:DA21_N0.073-0.1330.0722.191-12.152-0.728
140O_DA7:DT28_P-0.204-0.0430.2732.074-13.7647.122
145O_DA12:DT23_P-0.174-0.0880.1360.549-10.3552.69
141O_DG8:DC27_P-0.403-0.0230.2142.001-15.1087.487
148O_DG15:DT20_P-0.211-0.1950.1362.693-14.202-1.842
135O_DT2:DA33_P0.451-0.2881.293-16.783-9.2180.834
136O_DT3:DA32_P0.197-0.1760.169-4.565-14.371.686
137O_DT4:DA31_P0.188-0.1140.168-3.336-11.9251.059
138O_DT5:DA30_P0.157-0.090.14-0.577-12.3252.509
139O_DT6:DA29_P0.15-0.0790.1631.109-12.7614.592
142O_DT9:DA26_P0.1040.00.166-0.509-15.7387.322
143O_DT10:DA25_P0.176-0.120.135-2.028-16.4456.482
144O_DT11:DA24_P0.161-0.0590.179-3.721-12.7083.907
146O_DT13:DA22_P0.12-0.1260.1281.445-11.1321.586
147O_DT14:DA21_P0.058-0.1520.0972.359-12.8780.027

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.