6ERF: Base Pair Morphology Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 6ERF PDB ID: 6ERF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	I_DA7:DT28_J	-0.186	-0.058	0.26	1.913	-14.367	6.787
1	11	I_DA12:DT23_J	-0.159	-0.107	0.107	1.014	-11.143	0.451
1	7	I_DG8:DC27_J	-0.389	-0.051	0.203	1.491	-15.509	6.422
1	1	I_DT2:DA33_J	0.397	-0.21	1.245	-16.128	-7.694	2.696
1	2	I_DT3:DA32_J	0.197	-0.163	0.135	-3.256	-14.347	2.743
1	3	I_DT4:DA31_J	0.202	-0.122	0.204	-3.027	-12.439	2.598
1	4	I_DT5:DA30_J	0.154	-0.091	0.18	-0.877	-12.849	3.804
1	5	I_DT6:DA29_J	0.145	-0.07	0.192	0.691	-13.255	5.193
1	8	I_DT9:DA26_J	0.071	-0.022	0.163	-0.679	-15.638	5.544
1	9	I_DT10:DA25_J	0.127	-0.126	0.109	-1.519	-16.39	4.356
1	10	I_DT11:DA24_J	0.117	-0.077	0.145	-2.832	-13.17	1.724
1	12	I_DT13:DA22_J	0.06	-0.168	0.061	2.988	-11.969	-0.818
1	15	K_DA7:DT28_L	-0.145	0.057	0.314	1.598	-15.601	11.21
1	20	K_DA12:DT23_L	-0.165	-0.069	0.159	0.285	-10.24	2.071
1	16	K_DG8:DC27_L	-0.363	0.005	0.273	1.406	-16.244	9.391
1	13	K_DT5:DA30_L	0.346	0.067	0.487	-1.943	-16.098	10.987
1	14	K_DT6:DA29_L	0.253	0.077	0.356	-0.643	-15.376	11.598
1	17	K_DT9:DA26_L	0.174	-0.002	0.289	-1.852	-15.763	8.59
1	18	K_DT10:DA25_L	0.216	-0.111	0.247	-2.98	-16.101	6.904
1	19	K_DT11:DA24_L	0.199	-0.049	0.227	-4.17	-12.409	3.702
1	21	K_DT13:DA22_L	0.113	-0.096	0.148	1.815	-10.303	0.704
1	22	K_DT14:DA21_L	0.078	-0.169	0.113	4.23	-11.56	-0.852
1	26	M_DA7:DT28_N	-0.203	0.086	0.258	2.066	-15.24	10.732
1	31	M_DA12:DT23_N	-0.199	-0.095	0.173	-0.024	-10.241	3.444
1	27	M_DG8:DC27_N	-0.398	0.062	0.225	1.765	-16.456	9.827
1	34	M_DG15:DT20_N	-0.181	-0.201	0.158	3.711	-13.149	-2.529
1	23	M_DT4:DA31_N	0.115	-0.083	0.191	-2.284	-11.644	3.893
1	24	M_DT5:DA30_N	0.1	-0.041	0.156	0.091	-13.902	6.158
1	25	M_DT6:DA29_N	0.096	0.032	0.149	0.737	-14.281	8.643
1	28	M_DT9:DA26_N	0.137	0.048	0.223	-1.03	-16.03	9.111
1	29	M_DT10:DA25_N	0.221	-0.078	0.213	-2.247	-15.875	7.704
1	30	M_DT11:DA24_N	0.228	-0.048	0.247	-3.602	-12.173	5.082
1	32	M_DT13:DA22_N	0.13	-0.111	0.136	0.802	-10.499	1.456
1	33	M_DT14:DA21_N	0.073	-0.133	0.072	2.191	-12.152	-0.728
1	40	O_DA7:DT28_P	-0.204	-0.043	0.273	2.074	-13.764	7.122
1	45	O_DA12:DT23_P	-0.174	-0.088	0.136	0.549	-10.355	2.69
1	41	O_DG8:DC27_P	-0.403	-0.023	0.214	2.001	-15.108	7.487
1	48	O_DG15:DT20_P	-0.211	-0.195	0.136	2.693	-14.202	-1.842
1	35	O_DT2:DA33_P	0.451	-0.288	1.293	-16.783	-9.218	0.834
1	36	O_DT3:DA32_P	0.197	-0.176	0.169	-4.565	-14.37	1.686
1	37	O_DT4:DA31_P	0.188	-0.114	0.168	-3.336	-11.925	1.059
1	38	O_DT5:DA30_P	0.157	-0.09	0.14	-0.577	-12.325	2.509
1	39	O_DT6:DA29_P	0.15	-0.079	0.163	1.109	-12.761	4.592
1	42	O_DT9:DA26_P	0.104	0.0	0.166	-0.509	-15.738	7.322
1	43	O_DT10:DA25_P	0.176	-0.12	0.135	-2.028	-16.445	6.482
1	44	O_DT11:DA24_P	0.161	-0.059	0.179	-3.721	-12.708	3.907
1	46	O_DT13:DA22_P	0.12	-0.126	0.128	1.445	-11.132	1.586
1	47	O_DT14:DA21_P	0.058	-0.152	0.097	2.359	-12.878	0.027

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.