6ERF: Base Pair Morphology Step Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 6ERF PDB ID: 6ERF

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	6	II_DA7DG8:DC27DT28_JJ	0.006	0.385	3.326	0.233	3.863	33.935	0.03	0.027	3.348	6.593	-0.397	34.148
1	11	II_DA12DT13:DA22DT23_JJ	-0.065	0.413	3.357	0.436	4.176	34.405	0.03	0.179	3.382	7.028	-0.733	34.652
1	7	II_DG8DT9:DA26DC27_JJ	-0.04	0.468	3.391	0.405	2.871	37.934	0.338	0.114	3.416	4.409	-0.622	38.04
1	1	II_DT2DT3:DA32DA33_JJ	-0.299	0.171	3.316	9.523	-13.128	38.377	1.636	1.434	2.955	-18.971	-13.761	41.544
1	2	II_DT3DT4:DA31DA32_JJ	-0.006	0.496	3.373	-0.894	3.555	35.769	0.277	-0.122	3.404	5.769	1.451	35.951
1	3	II_DT4DT5:DA30DA31_JJ	0.062	0.473	3.297	0.096	4.616	34.529	0.076	-0.088	3.331	7.734	-0.161	34.827
1	4	II_DT5DT6:DA29DA30_JJ	0.109	0.439	3.311	0.292	3.955	34.671	0.121	-0.136	3.34	6.611	-0.488	34.89
1	5	II_DT6DA7:DT28DA29_JJ	0.062	0.421	3.261	-0.461	5.151	33.626	-0.108	-0.181	3.286	8.839	0.792	34.01
1	8	II_DT9DT10:DA25DA26_JJ	-0.001	0.385	3.347	1.022	2.642	36.336	0.24	0.147	3.364	4.229	-1.635	36.442
1	9	II_DT10DT11:DA24DA25_JJ	-0.041	0.454	3.38	-0.758	3.679	35.135	0.182	-0.049	3.409	6.073	1.252	35.329
1	10	II_DT11DA12:DT23DA24_JJ	-0.06	0.4	3.237	-0.198	5.384	32.46	-0.214	0.072	3.26	9.55	0.352	32.892
1	14	KK_DA7DG8:DC27DT28_LL	-0.059	0.396	3.275	-0.099	3.926	34.154	0.052	0.085	3.298	6.657	0.167	34.372
1	19	KK_DA12DT13:DA22DT23_LL	-0.065	0.388	3.382	0.099	5.115	33.881	-0.18	0.126	3.403	8.715	-0.169	34.254
1	15	KK_DG8DT9:DA26DC27_LL	-0.057	0.502	3.39	-0.241	3.905	38.591	0.258	0.055	3.423	5.89	0.364	38.781
1	12	KK_DT5DT6:DA29DA30_LL	0.076	0.467	3.243	1.152	3.636	35.306	0.234	0.043	3.274	5.974	-1.893	35.505
1	13	KK_DT6DA7:DT28DA29_LL	-0.01	0.414	3.177	0.091	4.72	33.507	-0.035	0.032	3.204	8.137	-0.157	33.828
1	16	KK_DT9DT10:DA25DA26_LL	-0.015	0.41	3.321	0.98	4.679	35.93	-0.012	0.165	3.345	7.544	-1.58	36.236
1	17	KK_DT10DT11:DA24DA25_LL	-0.034	0.456	3.352	-0.182	5.382	34.603	-0.082	0.028	3.383	8.981	0.304	35.007
1	18	KK_DT11DA12:DT23DA24_LL	-0.052	0.359	3.2	0.001	7.019	31.16	-0.61	0.095	3.202	12.863	-0.001	31.922
1	20	KK_DT13DT14:DA21DA22_LL	-0.028	0.432	3.314	1.059	4.57	34.106	0.002	0.215	3.34	7.746	-1.795	34.417
1	24	MM_DA7DG8:DC27DT28_NN	-0.021	0.39	3.297	-0.033	3.445	33.969	0.111	0.03	3.319	5.878	0.056	34.138
1	29	MM_DA12DT13:DA22DT23_NN	-0.081	0.392	3.394	0.42	5.908	34.24	-0.291	0.203	3.411	9.942	-0.707	34.733
1	25	MM_DG8DT9:DA26DC27_NN	-0.043	0.485	3.387	-0.089	3.034	38.397	0.345	0.053	3.414	4.604	0.136	38.513
1	21	MM_DT4DT5:DA30DA31_NN	0.106	0.469	3.282	0.507	4.315	34.596	0.12	-0.099	3.316	7.221	-0.848	34.86
1	22	MM_DT5DT6:DA29DA30_NN	0.15	0.444	3.307	0.417	3.385	35.23	0.224	-0.184	3.336	5.576	-0.687	35.389
1	23	MM_DT6DA7:DT28DA29_NN	0.078	0.412	3.24	-0.823	4.136	33.843	0.048	-0.263	3.264	7.071	1.407	34.097
1	26	MM_DT9DT10:DA25DA26_NN	-0.019	0.398	3.341	0.455	4.051	35.912	0.055	0.096	3.364	6.543	-0.734	36.135
1	27	MM_DT10DT11:DA24DA25_NN	-0.032	0.458	3.361	-0.682	5.735	34.44	-0.139	-0.054	3.391	9.602	1.142	34.906
1	28	MM_DT11DA12:DT23DA24_NN	-0.057	0.349	3.207	0.025	8.384	30.725	-0.888	0.108	3.189	15.465	-0.047	31.822
1	30	MM_DT13DT14:DA21DA22_NN	-0.054	0.413	3.332	1.449	5.048	34.096	-0.109	0.321	3.351	8.545	-2.452	34.486
1	31	MM_DT14DG15:DT20DA21_NN	-0.018	0.416	3.314	0.035	4.012	34.295	0.068	0.036	3.339	6.775	-0.059	34.522
1	37	OO_DA7DG8:DC27DT28_PP	0.049	0.38	3.327	0.328	4.154	33.499	-0.035	-0.029	3.349	7.172	-0.567	33.75
1	42	OO_DA12DT13:DA22DT23_PP	-0.063	0.401	3.398	0.157	5.205	34.339	-0.163	0.131	3.42	8.754	-0.264	34.719
1	38	OO_DG8DT9:DA26DC27_PP	-0.015	0.469	3.403	0.514	2.94	38.14	0.33	0.091	3.428	4.491	-0.785	38.253
1	32	OO_DT2DT3:DA32DA33_PP	-0.278	0.167	3.308	9.43	-12.942	38.222	1.625	1.406	2.958	-18.79	-13.692	41.325
1	33	OO_DT3DT4:DA31DA32_PP	-0.025	0.485	3.353	-0.519	3.428	35.337	0.277	-0.037	3.384	5.63	0.852	35.501
1	34	OO_DT4DT5:DA30DA31_PP	0.071	0.458	3.301	0.106	4.508	34.165	0.06	-0.104	3.332	7.631	-0.18	34.453
1	35	OO_DT5DT6:DA29DA30_PP	0.12	0.433	3.319	0.102	4.049	34.365	0.091	-0.186	3.347	6.823	-0.171	34.596
1	36	OO_DT6DA7:DT28DA29_PP	0.095	0.418	3.274	-0.881	5.569	33.167	-0.198	-0.31	3.295	9.669	1.529	33.629
1	39	OO_DT9DT10:DA25DA26_PP	0.011	0.391	3.364	0.796	2.713	36.542	0.237	0.095	3.383	4.318	-1.267	36.647
1	40	OO_DT10DT11:DA24DA25_PP	-0.035	0.457	3.386	-0.923	4.145	35.038	0.114	-0.085	3.416	6.854	1.526	35.286
1	41	OO_DT11DA12:DT23DA24_PP	-0.06	0.384	3.222	-0.361	6.423	31.518	-0.452	0.044	3.235	11.673	0.656	32.151
1	43	OO_DT13DT14:DA21DA22_PP	-0.036	0.431	3.339	1.08	4.741	34.546	-0.022	0.228	3.364	7.935	-1.807	34.876
1	44	OO_DT14DG15:DT20DA21_PP	-0.029	0.43	3.335	0.257	4.063	34.728	0.086	0.088	3.362	6.778	-0.428	34.958

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.