6F58: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6F58 PDB ID: 6F58

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	C_DA2:DT23_D	0.013	-0.139	0.27	4.848	-18.399	2.202
1	6	C_DA7:DT18_D	0.216	-0.187	0.161	2.963	-11.872	-4.396
1	8	C_DA9:DT16_D	0.535	-0.152	0.587	19.202	-17.261	1.282
1	12	C_DA13:DT12_D	0.316	0.034	-0.032	-1.748	-11.207	1.352
1	19	C_DA20:DT5_D	0.357	-0.251	0.438	9.615	-18.889	3.75
1	20	C_DA21:DT4_D	0.288	-0.247	0.745	11.113	-16.123	7.944
1	21	C_DA22:DT3_D	-0.145	-0.158	0.37	4.868	-13.997	6.668
1	5	C_DC6:DG19_D	0.219	-0.477	-0.065	-7.223	-5.374	-1.951
1	7	C_DC8:DG17_D	0.327	-0.209	0.181	-1.75	-5.403	-1.562
1	9	C_DC10:DG15_D	0.637	-0.188	0.409	6.625	-8.631	-2.5
1	10	C_DC11:DG14_D	0.298	-0.183	0.277	-4.055	-11.296	5.36
1	13	C_DG14:DC11_D	-0.178	-0.332	0.155	2.8	-10.558	0.657
1	14	C_DG15:DC10_D	-0.447	0.004	0.617	-5.39	-10.537	0.437
1	16	C_DG17:DC8_D	-0.665	-0.055	0.127	3.102	-4.461	1.937
1	18	C_DG19:DC6_D	-0.581	-0.565	0.105	6.778	-7.996	1.096
1	2	C_DT3:DA22_D	-0.002	-0.206	0.047	-0.939	-17.726	4.584
1	3	C_DT4:DA21_D	0.002	-0.266	0.416	-9.336	-13.968	6.438
1	4	C_DT5:DA20_D	-0.142	-0.197	0.522	-16.955	-18.291	2.121
1	11	C_DT12:DA13_D	-0.26	-0.272	-0.002	0.19	-10.429	-2.102
1	15	C_DT16:DA9_D	-0.385	-0.039	0.599	-17.961	-15.065	3.862
1	17	C_DT18:DA7_D	-0.325	-0.24	0.106	2.173	-13.503	0.058
1	22	C_DT23:DA2_D	0.501	-0.354	0.323	-4.482	-17.158	1.879
1	23	C_DT24:DA1_D	0.29	-0.566	0.214	-9.427	-19.149	1.596

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.