6F58: Base Pair Morphology Step Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

Search for released structures

NDB ID: 6F58 PDB ID: 6F58

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_DA2DT3:DA22DT23_DD	0.406	-0.736	3.292	1.277	2.208	32.308	-1.707	-0.503	3.249	3.96	-2.29	32.405
1	6	CC_DA7DC8:DG17DT18_DD	0.756	-0.846	3.361	0.837	-2.923	33.485	-0.965	-1.165	3.438	-5.06	-1.449	33.619
1	8	CC_DA9DC10:DG15DT16_DD	0.571	-1.153	3.67	-0.655	0.304	32.044	-2.149	-1.167	3.647	0.551	1.187	32.052
1	12	CC_DA13DG14:DC11DT12_DD	0.907	-0.864	3.22	-3.527	8.622	27.519	-3.488	-2.532	2.697	17.5	7.16	29.024
1	19	CC_DA20DA21:DT4DT5_DD	0.448	-0.66	3.181	-2.456	-4.325	33.638	-0.451	-1.151	3.199	-7.424	4.216	33.993
1	20	CC_DA21DA22:DT3DT4_DD	-0.09	-0.531	3.348	1.103	-2.703	35.97	-0.463	0.307	3.373	-4.368	-1.783	36.084
1	21	CC_DA22DT23:DA2DT3_DD	-0.42	-0.784	3.484	-0.644	2.119	34.909	-1.642	0.596	3.439	3.528	1.072	34.977
1	5	CC_DC6DA7:DT18DG19_DD	-0.845	1.194	3.122	-2.907	5.522	32.759	1.168	0.992	3.334	9.682	5.097	33.332
1	7	CC_DC8DA9:DT16DG17_DD	0.038	0.737	2.937	0.25	9.112	34.975	-0.006	-0.028	3.028	14.851	-0.408	36.107
1	9	CC_DC10DC11:DG14DG15_DD	1.314	-0.673	3.394	5.962	-6.437	36.992	-0.142	-1.192	3.617	-9.974	-9.238	37.982
1	10	CC_DC11DT12:DA13DG14_DD	-1.182	-0.79	3.123	3.862	10.299	28.375	-3.351	2.946	2.511	20.081	-7.53	30.392
1	13	CC_DG14DG15:DC10DC11_DD	-1.076	-0.471	3.316	-7.099	-5.943	37.394	0.065	0.702	3.487	-9.099	10.87	38.484
1	14	CC_DG15DT16:DA9DC10_DD	-0.599	-1.203	3.665	1.687	-1.091	32.191	-1.947	1.415	3.667	-1.966	-3.039	32.252
1	16	CC_DG17DT18:DA7DC8_DD	-0.668	-0.744	3.256	-0.004	-2.815	33.888	-0.821	1.142	3.305	-4.818	0.007	34.001
1	18	CC_DG19DA20:DT5DC6_DD	-0.392	0.725	3.263	-4.96	0.947	41.292	0.921	0.023	3.301	1.336	7.002	41.586
1	2	CC_DT3DT4:DA21DA22_DD	0.091	-0.532	3.477	-1.66	-1.143	37.556	-0.667	-0.371	3.484	-1.774	2.576	37.608
1	3	CC_DT4DT5:DA20DA21_DD	-0.434	-0.845	3.399	0.011	-1.531	32.576	-1.227	0.776	3.434	-2.727	-0.019	32.611
1	4	CC_DT5DC6:DG19DA20_DD	0.383	0.578	3.026	6.438	0.185	38.767	0.839	0.147	3.051	0.277	-9.618	39.278
1	11	CC_DT12DA13:DT12DA13_DD	0.145	-0.839	3.211	0.534	12.986	28.147	-3.909	-0.176	2.584	25.079	-1.031	30.948
1	15	CC_DT16DG17:DC8DA9_DD	0.254	0.676	2.936	0.194	9.501	33.078	-0.232	-0.401	3.011	16.273	-0.333	34.379
1	17	CC_DT18DG19:DC6DA7_DD	0.67	1.074	3.252	1.417	7.287	31.211	0.586	-0.949	3.435	13.308	-2.587	32.06
1	22	CC_DT23DT24:DA1DA2_DD	0.345	-0.209	3.331	4.864	-0.52	35.299	-0.264	0.161	3.35	-0.853	-7.973	35.625

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.