A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6G7Z  PDB ID: 6G7Z 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
110A_A14:U33_A-1.715-0.2410.584-14.58-37.7491.879
111A_A15:G31_A0.8332.485-0.904-4.618-25.075-42.357
112A_A17:G30_A-0.7651.0030.8410.02-23.183-22.8
114A_A19:U28_A0.962-0.3280.0388.041-23.2123.405
120A_A41:U61_A-0.842-0.0530.4942.942-28.07411.449
123A_A44:U58_A-1.2710.1470.4433.159-24.06415.281
131A_A65:A170_B6.563-1.178-0.07713.517-39.79956.1
140A_A74:U164_B0.8470.31-0.388-14.056-11.689-10.182
141A_A75:U163_B0.576-0.3510.515-11.397-4.175-11.858
143A_A77:U161_B-0.7140.243-0.54-1.291-12.787-5.462
156A_A91:C127_A0.930.712-0.441-8.123-5.8-174.422
129A_A106:U52_A-0.913-0.145-0.623-5.114-13.74416.437
157A_A116:U97_A-0.2172.5730.08614.528-10.866138.304
11A_C1:C140_B2.0741.5890.7178.15212.357166.444
17A_C11:G36_A-0.573-0.1740.556-8.12-8.948-0.055
18A_C12:G35_A0.2280.181-0.1639.079-9.2035.237
19A_C13:G34_A2.061-0.2980.061-9.192-14.428-9.1
113A_C18:G29_A0.5910.3610.73212.443-14.66-4.845
116A_C21:G26_A0.919-0.4920.3598.086-20.3574.175
122A_C43:G59_A0.895-0.4040.88-2.387-5.5455.301
127A_C48:A54_A3.768-0.2220.654-13.575.309-2.43
133A_C67:G6_A0.585-0.4810.109-2.0619.017-6.122
142A_C76:G162_B-0.32-0.2060.926-5.262-8.621.096
144A_C78:G160_B1.316-0.2660.452-2.236-8.3717.394
158A_C118:G96_A-0.8810.129-1.04916.645-11.1256.868
159A_C119:G95_A-0.3280.7960.026-5.0077.10518.273
162A_C122:G129_A-0.42-0.148-0.377-6.006-14.377-8.754
163A_C123:G128_A-0.156-0.5320.831-13.69619.487-6.508
118A_G39:C63_A0.041-0.0490.413-9.044-14.9174.902
125A_G46:C56_A-0.556-0.530.006-2.444-13.173.65
126A_G47:C55_A1.3530.349-0.158-25.129-6.7810.285
134A_G68:C5_A0.708-0.022-0.443-6.29-9.1354.463
135A_G69:C4_A0.461-0.122-0.435-9.968-2.1829.057
136A_G70:U168_B-0.176-0.2880.03310.765-6.313176.263
139A_G73:C165_B-1.398-0.406-0.151-7.3272.5160.876
164A_G99:C110_A-0.095-0.034-0.948-2.48-5.795-11.949
165A_G100:C109_A1.3560.131-0.1397.8221.6375.599
166A_G101:C108_A1.9670.1920.1355.4755.68714.49
128A_G105:C53_A0.5650.307-0.0942.045-15.39418.588
160A_G120:C94_A0.156-0.0960.6839.0654.646-4.403
115A_U20:G27_A1.753-0.431-0.46320.201-27.17-10.858
117A_U22:G25_A0.487-6.158-0.986-6.368-23.902-107.385
119A_U40:G62_A2.303-0.5360.376-1.443-5.387-3.995
121A_U42:A60_A0.0230.2230.253-12.358-19.1685.203
124A_U45:A57_A1.3710.0680.42319.595-35.65223.878
132A_U66:G7_A2.896-0.333-0.61-4.988-5.3345.332
137A_U71:A167_B-1.3170.399-0.08914.045-9.8677.049
138A_U72:A166_B-0.032-0.0130.00310.167-5.3338.145
145A_U79:U83_A-1.957-2.3570.308-18.061-1.714-170.839
130A_U107:A51_A-0.22-0.092-0.438-0.3465.312-5.151
161A_U121:A93_A0.5710.222-0.1559.525-11.562-5.18
13B_A173:U138_B-1.158-0.349-0.187-16.917-25.6419.983
148B_C145:G87_A-0.9490.1070.09118.197-15.998-1.363
149B_C146:G86_A2.176-0.189-0.04719.094-12.23419.508
150B_C147:G85_A1.607-0.325-0.32126.887-17.07517.319
153B_C150:G158_B-0.1540.395-0.92512.412-25.69-5.236
154B_C151:G157_B0.891-0.1320.487-9.176-1.162-12.258
12B_C172:G139_B-0.3140.153-0.2790.749-13.789-8.141
16B_C176:G135_B0.681-0.5460.0086.891-5.5160.843
168B_C180:G187_B-0.933-0.16-0.3730.829-5.32-1.211
169B_C181:G186_B0.419-0.229-0.3056.6390.953-6.854
146B_G143:U89_A-1.702-0.928-0.184-5.381-14.783-2.598
147B_G144:U88_A-1.704-0.3510.6618.022-11.239-0.231
152B_G149:U159_B-0.923-0.259-0.02-1.137-12.1525.673
14B_G174:C137_B-0.664-0.3750.379-2.997-6.084-5.539
170B_G182:A185_B8.299-5.4020.20213.6279.152-33.674
151B_U148:U84_A1.917-2.021-0.10331.723-17.6345.178
155B_U152:A156_B1.783-0.134-1.126-5.718-19.278-3.599
15B_U175:A136_B-0.803-0.043-0.01111.038-5.778-17.55
167B_U179:A188_B-0.325-0.302-0.59623.291-18.189-5.316

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.