A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jun-2019 number of released structures: 10246
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NDB ID: 6GCE  PDB ID: 6GCE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14D_DA5:DT10_C0.0410.0390.10816.59-13.511.343
12D_DC3:DG12_C-0.706-0.214-0.4869.034-7.3472.075
15D_DC7:DG8_C0.149-0.1440.163-13.688-3.5851.016
18D_DC11:DG4_C0.142-0.2630.281-16.463-7.8233.95
110D_DC13:DG2_C0.596-0.5560.111-8.162-6.7283.246
11D_DG2:DC13_C-0.09-0.591-0.044-1.177-18.686-2.762
16D_DG8:DC7_C-0.217-0.0940.39317.307-1.1990.472
13D_DT4:DA11_C0.135-0.286-0.35319.568-6.9480.908
17D_DT10:DA5_C-0.122-0.0730.014-16.229-14.915-0.141
19D_DT12:DA3_C-0.155-0.195-0.071-3.273-4.1822.272

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.