A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6GDS  PDB ID: 6GDS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_DA3:DT8_B0.098-0.146-0.1-3.068-9.4651.646
14A_DA4:DT7_B0.415-0.169-0.2922.417-12.325-5.781
119A_DA9:DT2_D0.019-0.1710.117.454-8.118-1.85
120A_DA10:DT1_D1.0580.2140.1948.686-22.152-11.374
11A_DC1:DG10_B0.4230.030.41-2.989-12.5262.406
115A_DC5:DG6_D0.456-0.3020.1879.704-18.57-3.071
116A_DC6:DG5_D-0.2110.342-0.25-3.182-16.907-18.275
117A_DC7:DG4_D-0.008-0.1120.299-7.605-9.751-4.652
12A_DT2:DA9_B-0.705-0.176-0.0688.244-18.001-8.859
118A_DT8:DA3_D0.2960.520.411-7.644-4.218-11.653
113C_DA3:DT8_D-0.088-0.209-0.028-7.607-14.969-0.483
114C_DA4:DT7_D0.53-0.1430.0971.504-14.137-5.605
19C_DA9:DT2_B-0.26-0.14-0.0284.901-4.208-8.562
110C_DA10:DT1_B0.556-0.064-0.1124.617-22.908-6.73
111C_DC1:DG10_D0.264-0.1230.2314.412-13.609-0.506
15C_DC5:DG6_B0.233-0.1350.255.542-23.051-3.417
16C_DC6:DG5_B0.043-0.2560.571-6.88-14.245-11.425
17C_DC7:DG4_B-0.1310.3460.941-3.856-6.5639.271
112C_DT2:DA9_D0.118-0.1980.2657.161-10.1512.569
18C_DT8:DA3_B-1.7960.655-0.1363.557-5.641-31.403

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.