A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6GDS  PDB ID: 6GDS 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13AA_DA3DA4:DT7DT8_BB-0.409-0.093.238-1.7841.66430.66-0.4940.4253.2473.1413.36830.755
14AC_DA4DC5:DG6DT7_BB1.068-0.8463.11-3.363-2.18729.166-1.225-2.783.025-4.3176.63829.435
118AA_DA9DA10:DT1DT2_DD-0.351-0.2183.277-2.905-0.52734.581-0.2830.1413.297-0.8854.87634.703
11AA_DC1DT2:DA9DG10_BB-0.6240.2293.0612.372-2.15837.9060.6061.2383.0-3.315-3.64438.036
114AA_DC5DC6:DG5DG6_DD-0.485-1.2113.5228.4735.18935.08-2.6841.9963.128.403-13.71936.418
115AA_DC6DC7:DG4DG5_DD0.763-0.0943.4551.3592.76336.537-0.551-1.0153.4644.397-2.16436.662
116AA_DC7DT8:DA3DG4_DD-0.351-0.1183.365-0.454.62932.168-1.0430.5463.3218.30.80732.493
12AA_DT2DA3:DT8DA9_BB0.3970.6123.4593.9530.48547.8270.712-0.1573.4850.597-4.86647.982
117AA_DT8DA9:DT2DA3_DD0.1771.7822.9853.022-3.03542.6562.7090.0272.863-4.159-4.14242.86
112CC_DA3DA4:DT7DT8_DD-0.358-0.0332.969-2.6960.15234.518-0.0770.2232.9880.2554.53434.62
113CA_DA4DC5:DG6DT7_DD1.073-0.7363.109-0.091-6.52931.477-0.191-1.9553.19-11.8760.16532.13
19CC_DA9DA10:DT1DT2_BB-0.380.3863.243-1.3451.10337.4820.4560.4163.2641.7152.09237.521
110CC_DC1DT2:DA9DG10_DD-0.246-0.1243.4140.108-0.17836.369-0.1720.413.414-0.285-0.17436.369
15CC_DC5DC6:DG5DG6_BB-0.198-0.8123.62.4970.17338.367-1.2570.6423.5770.263-3.79438.445
16CC_DC6DC7:DG4DG5_BB0.667-0.4313.2470.1722.07832.665-1.119-1.1553.2173.69-0.30632.73
17CC_DC7DT8:DA3DG4_BB-1.506-0.6292.9226.8582.80826.413-1.9014.5782.3835.997-14.64627.415
111CC_DT2DA3:DT8DA9_DD0.210.4213.5955.266-0.15642.5140.5940.2913.593-0.215-7.22942.824
18CC_DT8DA9:DT2DA3_BB1.2941.8183.399-0.026-0.4547.4062.299-1.6113.382-0.560.03247.408

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.