6GIS: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6GIS PDB ID: 6GIS

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	D_DA1:DT10_E	-0.271	-0.015	-0.248	-15.588	-13.102	-2.449
1	3	D_DA3:DT8_E	0.103	-0.255	0.414	-1.811	-5.576	3.045
1	6	D_DA6:DT5_E	0.031	-0.162	-0.1	3.337	-25.408	-3.936
1	4	D_DC4:DG7_E	0.22	-0.15	0.654	1.85	-9.432	2.441
1	5	D_DG5:DC6_E	-0.527	-0.083	0.022	7.506	-22.511	4.057
1	8	D_DG8:DC3_E	-0.469	-0.126	-0.131	-16.267	-28.569	4.973
1	9	D_DG9:DC2_E	-0.106	-0.026	0.256	-1.64	-9.815	2.827
1	10	D_DG10:DC1_E	0.05	0.117	0.604	22.471	-9.784	3.642
1	2	D_DT2:DA9_E	-0.274	-0.083	0.422	-18.9	-26.486	-0.73
1	7	D_DT7:DA4_E	0.041	-0.106	1.114	-24.156	-20.443	-1.213

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.