A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: 6GIS  PDB ID: 6GIS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11D_DA1:DT10_E-0.271-0.015-0.248-15.588-13.102-2.449
13D_DA3:DT8_E0.103-0.2550.414-1.811-5.5763.045
16D_DA6:DT5_E0.031-0.162-0.13.337-25.408-3.936
14D_DC4:DG7_E0.22-0.150.6541.85-9.4322.441
15D_DG5:DC6_E-0.527-0.0830.0227.506-22.5114.057
18D_DG8:DC3_E-0.469-0.126-0.131-16.267-28.5694.973
19D_DG9:DC2_E-0.106-0.0260.256-1.64-9.8152.827
110D_DG10:DC1_E0.050.1170.60422.471-9.7843.642
12D_DT2:DA9_E-0.274-0.0830.422-18.9-26.486-0.73
17D_DT7:DA4_E0.041-0.1061.114-24.156-20.443-1.213

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.