6GLD: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507

Search for released structures

NDB ID: 6GLD PDB ID: 6GLD

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	B_DC2:DG9_B	0.072	-0.077	0.272	-13.273	6.987	0.979
1	4	B_DC5:DG6_B	0.246	-0.072	0.305	-3.613	-5.172	0.404
1	6	B_DC7:DG4_B	0.201	-0.18	-0.074	9.06	2.142	-1.127
1	7	B_DC8:DG3_B	0.235	-0.032	0.263	-24.689	-5.849	-0.827
1	2	B_DG3:DC8_B	-0.235	-0.032	0.263	24.689	-5.849	-0.827
1	3	B_DG4:DC7_B	-0.201	-0.18	-0.074	-9.06	2.142	-1.127
1	5	B_DG6:DC5_B	-0.246	-0.072	0.305	3.613	-5.172	0.404
1	8	B_DG9:DC2_B	-0.072	-0.077	0.272	13.273	6.987	0.979

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.