Download
Software
Tools
Education
Standards
About NDB
A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search DNA
Search RNA
Advanced Search
Search for released structures
NDB ID:
6GLD
PDB ID:
6GLD
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
B_DC2:DG9_B
0.072
-0.077
0.272
-13.273
6.987
0.979
1
4
B_DC5:DG6_B
0.246
-0.072
0.305
-3.613
-5.172
0.404
1
6
B_DC7:DG4_B
0.201
-0.18
-0.074
9.06
2.142
-1.127
1
7
B_DC8:DG3_B
0.235
-0.032
0.263
-24.689
-5.849
-0.827
1
2
B_DG3:DC8_B
-0.235
-0.032
0.263
24.689
-5.849
-0.827
1
3
B_DG4:DC7_B
-0.201
-0.18
-0.074
-9.06
2.142
-1.127
1
5
B_DG6:DC5_B
-0.246
-0.072
0.305
3.613
-5.172
0.404
1
8
B_DG9:DC2_B
-0.072
-0.077
0.272
13.273
6.987
0.979
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.