A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Sep-2018 number of released structures: 9779
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NDB ID: 6GMY  PDB ID: 6GMY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_EAN2:A19_B0.049-0.1840.885-6.331-14.620.636
16A_EAN7:A14_B-0.004-0.0060.191-6.651-11.242-2.8
17A_EAN8:A13_B0.1010.009-0.074-1.854-8.549-3.629
13A_F4Q4:C17_B-0.114-0.0860.113-5.774-12.824-0.642
14A_F4Q5:C16_B-0.156-0.068-0.101-10.21-12.3630.057
12A_TCJ3:G18_B0.217-0.0850.2450.907-19.087-0.414
15A_TCJ6:G15_B-0.026-0.0070.183-1.001-10.3271.298
18A_TCY9:U12_B-0.2570.0230.026.021.9929.844

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.