A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Sep-2020 number of released structures: 10967
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NDB ID: 6GN3  PDB ID: 6GN3 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_DC1DC2:DG11DG12_BB0.569-1.4843.2330.2254.99134.526-3.201-0.9173.08.355-0.37734.875
12AA_DC2DC3:DG10DG11_BB-1.255-1.7063.337-5.81612.36831.365-4.7891.2522.67821.63610.17434.145
13AA_DC3DG4:DC9DG10_BB1.16-1.8943.1176.6619.24828.152-5.307-1.0032.58218.101-13.03730.328
14AA_DG4DG5:DC8DC9_BB0.661-1.7983.2850.9562.7829.333-4.116-1.0993.1245.472-1.88129.477
15AA_DG5DG6:DC7DC8_BB-0.249-1.3773.2951.034.70734.599-2.9920.5683.0787.867-1.72234.923
16CC_DC1DC2:DG11DG12_DD0.102-1.3773.0260.7992.6732.81-2.844-0.0552.914.716-1.41132.925
17CC_DC2DC3:DG10DG11_DD-0.58-1.3533.167-2.8382.82432.047-2.9130.563.0785.095.11632.29
18CC_DC3DG4:DC9DG10_DD-0.351-1.4153.210.7478.29332.07-3.7820.7332.75914.703-1.32433.106
19CC_DG4DG5:DC8DC9_DD0.671-2.1043.2814.1588.22430.141-5.312-0.5112.69315.369-7.7731.487
110CC_DG5DG6:DC7DC8_DD0.326-1.7413.2020.7023.17532.465-3.626-0.4643.0295.661-1.25232.624
111EE_DC1DC2:DG11DG12_FF0.043-1.5872.959-3.7285.29629.761-3.935-0.7252.61910.167.15230.442
112EE_DC2DC3:DG10DG11_FF-0.081-1.7153.302-1.5623.44234.003-3.451-0.1043.1195.8632.6634.206
113EE_DC3DG4:DC9DG10_FF0.135-1.6423.2710.3597.26130.562-4.321-0.1862.81813.536-0.66931.395
114EE_DG4DG5:DC8DC9_FF0.43-1.9173.4352.1765.30732.562-4.276-0.3843.1149.374-3.84433.05
115EE_DG5DG6:DC7DC8_FF0.163-1.9863.3426.5215.66734.132-4.1130.6822.9659.468-10.89535.177

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.