A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6GO5  PDB ID: 6GO5 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17H_DA8:DT5_F-0.195-0.266-0.257-11.561-12.0926.09
18H_DA9:DT4_F-0.371-0.296-0.543-3.667-9.735-0.414
19H_DA10:DT3_F0.128-0.0290.229.242-13.355.614
111H_DA12:DT1_F0.1840.215-0.1999.164-13.59630.088
11H_DC1:DG6_G-0.11-0.1380.51-14.388-9.7-8.484
13H_DC3:DG4_G-0.001-0.1730.237-3.618-13.956-3.658
16H_DC7:DG6_F0.722-0.23-0.246-3.359-11.1385.867
110H_DC11:DG2_F-0.693-0.125-0.19610.222-20.485.69
12H_DG2:DC5_G-0.071-0.1510.164-3.869-7.77-3.507
15H_DG5:DC2_G-0.265-0.1850.62721.7314.553-1.314
14H_DT4:DA3_G0.017-0.2380.1011.147-11.218-0.814
112L_DG2:DC11_N-0.872-0.0110.208-19.72-21.1069.63
116L_DG6:DC7_N-0.652-0.153-0.1351.25-9.8425.469
113L_DT3:DA10_N0.2020.0570.178-7.689-13.33711.962
114L_DT4:DA9_N0.17-0.251-0.076-1.821-10.455-0.803
115L_DT5:DA8_N0.259-0.23-0.11810.558-13.8197.396
117N_DC1:DG6_M-0.424-0.1170.402-9.525-6.312-2.694
119N_DC3:DG4_M-0.107-0.07-0.03-3.557-12.958-2.378
118N_DG2:DC5_M0.213-0.1660.0330.331-12.138-3.458
121N_DG5:DC2_M0.02-0.0450.55619.1596.9591.04
120N_DT4:DA3_M0.118-0.126-0.07-0.382-10.8461.449

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.