A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
Search for released structures

NDB ID: 6GO5  PDB ID: 6GO5 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
16HH_DA8DA9:DT4DT5_FF-0.512-0.0073.2671.491-0.01832.042-0.0091.1933.24-0.032-2.69932.076
17HH_DA9DA10:DT3DT4_FF-0.5030.3862.963-6.7312.1738.4230.3360.0043.0223.26410.12339.044
18HH_DA10DC11:DG2DT3_FF-0.096-0.1263.33.1682.21629.204-0.7230.8693.2544.37-6.24929.454
11HH_DC1DG2:DC5DG6_GG0.1750.5523.051.4392.55934.2420.559-0.0853.0864.337-2.43934.364
13HH_DC3DT4:DA3DG4_GG0.247-0.1313.2391.3235.21235.612-0.946-0.2143.1958.462-2.14736.002
15HH_DC7DA8:DT5DG6_FF-0.267-0.2773.549-1.14517.0929.219-3.4420.2622.95330.772.06233.775
19HH_DC11DA12:DT1DG2_FF1.2742.3783.4247.1063.86245.8352.652-0.9523.7494.913-9.04146.505
12HH_DG2DC3:DG4DC5_GG0.01-0.2053.1980.253.56134.281-0.8850.0213.1616.022-0.42334.461
14HH_DT4DG5:DC2DA3_GG0.714-0.1952.782-5.0361.88328.62-0.73-2.3352.6033.76810.07429.11
110LL_DG2DT3:DA10DC11_NN0.1920.1613.106-0.555-0.0934.1880.288-0.413.103-0.1530.94434.192
111LL_DT3DT4:DA9DA10_NN0.3020.3153.2243.4591.16235.3940.3480.0063.2471.906-5.6735.575
112LL_DT4DT5:DA8DA9_NN0.615-0.0813.11.151-1.30633.1450.067-0.8943.12-2.287-2.01633.19
113LL_DT5DG6:DC7DA8_NN0.228-0.2713.5781.38816.86229.562-3.382-0.1493.00330.139-2.48133.967
114NN_DC1DG2:DC5DG6_MM-0.0930.4463.0941.1965.48737.6350.0180.2883.1228.447-1.84138.036
116NN_DC3DT4:DA3DG4_MM0.244-0.1023.2681.1056.09135.472-1.03-0.2393.2139.903-1.79635.991
115NN_DG2DC3:DG4DC5_MM0.186-0.3283.3061.2040.67634.174-0.666-0.1243.3031.149-2.04834.201
117NN_DT4DG5:DC2DA3_MM0.731-0.1892.83-5.8991.57828.923-0.652-2.4892.6193.11611.64729.547

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.