6GO6: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 6GO6 PDB ID: 6GO6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	F_DT1:DA5_E	-0.739	-0.208	-0.087	2.503	-8.428	3.011
1	2	F_DT2:DA4_E	-0.162	-0.035	-0.324	3.664	-16.128	3.829
1	3	F_DT3:DA3_E	0.019	-0.107	-0.09	0.705	-16.942	1.098
1	4	F_DT4:DA2_E	0.032	-0.055	-0.03	2.557	-7.571	-0.05
1	5	F_DT5:DA1_E	-0.186	-0.009	-0.098	8.046	-7.863	5.465

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.