A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 6HHQ  PDB ID: 6HHQ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
141_A6:U153_4-4.765-0.3890.50418.712-5.67310.592
191_A11:U147_4-0.2390.0120.3814.334-14.085-1.701
1101_A12:U146_40.176-0.2960.69614.351-19.2520.639
1111_A13:U145_4-0.28-0.3220.63620.928-8.554-10.523
1131_A16:U143_40.037-0.212-0.245-19.658-3.075-3.267
1171_A20:U139_4-0.264-0.113-0.3063.256-19.84.384
1591_A34:U50_1-3.907-2.425-0.731-9.046-11.783-95.928
1601_A35:A48_15.964-5.13-0.24311.6557.398179.95
1661_A60:U326_1-4.209-2.719-0.586-3.281-6.376-91.027
1851_A65:U322_1-4.283-1.6610.21632.4133.383-90.832
1671_A66:G76_1-6.326-4.5211.208-25.4390.3554.035
1831_A77:A324_1-1.699-0.897-0.654-5.404-9.48173.773
1701_A95:G91_1-7.028-5.0940.221-14.87616.59-17.847
1741_A99:U87_1-3.875-2.124-0.964-0.135-17.239-95.801
1751_A100:A85_16.508-4.9220.09811.9595.048179.984
1811_A106:U79_10.3760.1040.199-10.955-0.0654.256
1901_A114:U154_1-4.026-2.160.5-14.2883.659-90.439
1911_A115:U153_1-5.181-1.939-0.96524.0992.826-37.483
1921_A122:G148_16.51-5.101-0.63415.89423.4914.519
1931_A123:U149_10.293-0.3690.03.324-6.187-3.252
11001_A130:U138_10.085-0.088-0.188-4.303-11.8516.836
11031_A157:G264_1-7.048-4.418-0.0443.733-13.875-13.679
11051_A159:U262_1-0.544-0.267-0.226-4.136-14.568-2.882
11101_A165:U257_1-0.147-0.2441.462-2.5433.01618.743
11321_A211:U228_13.4640.744-1.258-12.15720.80790.887
11391_A222:U207_10.1330.0030.32610.429-23.487-4.75
11531_A268:A296_1-5.6684.8560.024-32.119-7.767-175.309
11571_A273:U292_10.281-0.153-0.448-12.95-10.2234.955
1821_A325:U78_10.141.440.426-7.87420.281168.944
1331_A349:A344_1-4.1040.9361.221-11.92218.272-105.4
11851_A352:A366_16.399-5.101-0.2117.5213.886174.333
11871_A355:G364_1-6.787-4.239-0.2316.492-5.422-6.863
11891_A357:U362_10.397-0.227-0.1943.9174.154-15.574
1361_A369:U20_40.238-0.216-0.211-8.8693.481-4.384
11901_A386:G383_1-6.862-5.0880.479-24.23417.226-16.95
11911_A387:U382_10.072-0.27-0.048-7.104-0.068-1.825
11931_A389:U380_10.3830.025-0.07-5.601-12.0021.203
11951_A391:A377_1-6.245-1.012-0.312-0.109-26.3550.536
11491_A395:A372_16.166-5.0340.28940.008-16.037179.858
11511_A397:A374_1-1.499-1.9590.05-11.116-4.844176.611
11501_A399:A375_1-1.727-0.483-0.378-16.8410.286178.707
1401_A407:G16_4-6.752-5.0480.848-18.62522.135-2.837
1411_A408:G15_4-6.587-4.727-0.07819.1966.43-5.295
1421_A409:C14_4-5.226-1.912-0.49447.559-25.404-24.785
1491_A416:U7_40.101-0.1180.247-4.162-3.969-4.296
1501_A417:U6_40.279-0.1090.409-4.641-14.5012.972
1511_A418:U5_40.333-0.3120.5336.9-18.598-4.411
12081_A428:U631_1-0.208-0.2110.4118.226-10.036-0.999
12131_A433:U626_1-0.218-0.0030.1252.698-20.5461.538
12161_A436:U623_10.3141.3320.245-12.346-11.581-44.847
12211_A498:U615_10.073-0.0180.105-3.316-2.193-0.497
12241_A501:U612_10.032-0.0950.519-1.311-7.7231.506
12271_A504:U587_10.008-0.1030.0772.422-26.1519.177
12391_A516:U574_10.165-0.2740.561-3.971-4.7571.146
12421_A521:U571_1-4.295-1.7210.0511.0314.952-99.334
12431_A522:A570_1-4.5730.974-0.16210.356-2.423-97.182
12441_A523:A569_1-4.7760.666-0.318.146-0.553-98.343
12481_A527:U565_1-0.6820.099-0.362-3.853-16.1763.821
12501_A529:U563_1-0.429-0.091-0.14.704-4.048-2.14
12531_A532:G560_10.5850.8640.875-13.235-16.289-17.276
12561_A537:A554_1-6.954-3.846-0.17413.923-6.5153.056
12651_A598:U605_1-0.235-0.177-0.52-16.408-20.8786.966
12691_A649:U640_1-0.0730.2320.7195.356-23.0254.243
13051_A665:U797_1-0.177-0.309-0.3198.579-11.1360.174
13061_A666:U796_10.001-0.1260.25816.56-4.397.058
13121_A672:U790_10.1410.0670.043.456-9.09-4.32
13161_A677:G703_12.3826.979-1.37137.645-0.216152.398
13261_A706:U713_1-0.2030.0330.354-10.864-7.096-2.136
13291_A736:G733_1-6.887-4.688-0.045-24.69113.169-13.452
13311_A738:U731_1-0.066-0.4090.6347.6250.635-1.987
13361_A744:G726_1-6.65-4.2430.343-8.008-9.737-5.836
13381_A746:U724_1-0.163-0.290.1786.125-1.9694.687
13391_A747:U723_10.642-0.4150.1867.956-9.488-2.289
13431_A751:U782_10.1010.0810.22618.729-6.2930.603
13471_A755:U777_1-0.646-0.277-0.44-4.762-4.738-0.446
13531_A761:G770_1-7.027-4.5351.206-24.0067.842-15.81
13571_A806:U935_1-4.157-2.169-0.412-5.773-18.438-107.435
13581_A807:G934_11.398-1.127-1.094-26.107-5.286-165.401
13591_A808:U932_10.339-3.694-1.44929.18112.027159.065
13611_A810:U930_1-0.165-0.534-0.029-5.76-16.8410.605
13731_A820:U905_1-0.1190.0030.2315.13-10.17-3.68
13801_A827:U898_1-0.51-0.096-0.066-9.699-3.513-4.261
13811_A828:U897_10.2370.0530.308-1.23-10.5581.785
13831_A848:G845_1-7.389-4.9440.108-22.9786.541-11.082
13931_A858:G835_1-6.194-4.2031.348-25.9162.74813.759
14001_A866:C893_1-6.024-4.7950.021-1.551-12.032-24.425
14081_A876:U885_10.09-0.3020.205-12.977-10.967-2.122
14161_A884:U2978_1-0.19-0.181-0.281-17.25521.474-3.478
14171_A921:A2139_16.812-0.3980.429-44.449-26.19162.125
14201_A965:U956_1-0.303-0.5220.151-0.1-11.923-3.333
14221_A967:U954_10.081-0.288-0.609-23.424-4.2466.562
14251_A970:U1111_1-0.035-0.193-0.363-23.011-1.4223.248
14271_A972:U1109_10.14-0.1850.6532.042-8.139-0.614
14281_A973:U1108_10.396-0.0850.3355.625-2.654-1.05
14351_A983:U1100_10.085-0.168-0.23913.013-5.1472.532
14401_A989:U1060_1-0.057-0.229-0.226-3.608-12.775-3.878
14431_A992:A1057_12.4381.3860.064-7.256-2.296-2.029
14471_A996:A1053_1-6.961-4.058-0.1994.186-10.915-0.163
14481_A997:U1052_10.162-0.018-0.599-1.397-17.744-12.927
14491_A998:U1050_1-0.26-0.5570.1761.096-16.736-7.28
14531_A1006:U1044_1-0.715-0.227-0.0366.896-17.43215.202
14561_A1009:U1041_10.74-0.329-0.192-10.8080.7-4.486
14581_A1011:U1039_1-0.1-0.2160.346.484-11.312-4.063
14701_A1064:U1096_10.964-2.05-1.376-14.52114.50578.626
14821_A1130:G1127_1-7.472-5.1160.96-17.054-1.819-24.391
14841_A1133:U1125_10.611-0.2540.23.981-1.9751.21
14861_A1135:U1123_1-0.611-0.062-0.421-5.8955.4531.446
14871_A1136:U1122_1-0.418-0.161-0.185-9.879-7.8524.39
14941_A1143:A952_1-5.8235.3020.178-40.2512.317-162.906
15551_A1203:A1301_1-6.4425.08-0.443-31.3137.247-178.728
15561_A1205:U1299_1-0.537-0.301-0.0161.341-11.44-1.108
15621_A1212:U1293_1-0.0310.0350.2781.8411.9240.868
15671_A1217:U1288_1-0.704-0.2470.1-0.484-9.5186.326
15701_A1223:G1285_1-8.026-4.13-0.342-17.8921.756-42.135
15711_A1225:C1284_1-6.113-2.2871.4536.00618.74419.866
15851_A1231:A1278_15.336-3.335-2.1250.59357.833-17.189
15781_A1240:C1248_16.663-2.4210.878-12.087-24.955-15.99
15261_A1317:U1188_10.0321.424-0.577.745-24.894174.748
15341_A1326:U1173_10.305-0.145-0.0197.965-15.763-9.662
15381_A1330:U1168_1-4.374-2.620.18.1378.754-96.016
15391_A1332:U1167_10.6160.193-0.11216.387-8.332-5.87
15441_A1337:U1162_10.471-0.1730.00212.182-6.2574.347
15501_A1343:U1361_1-0.163-0.005-0.281-7.4720.9676.83
14961_A1369:G950_1-6.872-4.721-0.138-2.5620.05-7.037
15001_A1373:U946_10.178-0.1680.255-5.015-11.751-0.975
15081_A1381:U1425_1-0.09-0.08-0.338-9.928-10.3046.032
15921_A1393:G1417_1-6.295-4.4120.782-22.738-6.198-0.512
15931_A1394:C1416_1-7.338-4.4570.2055.247-8.8995.572
15991_A1401:U1410_10.019-0.226-0.177-4.098-1.253-0.92
12781_A1435:G659_1-6.882-4.1691.07720.635-29.930.887
12901_A1449:G2355_1-6.853-4.2190.661-3.6-13.0313.17
16031_A1453:U1840_10.3720.620.0412.9316.88166.709
16051_A1467:U1463_1-4.386-2.8350.677-8.8163.567-89.856
16101_A1474:U1458_1-0.48-0.41-0.12-0.195-11.9010.69
16111_A1475:U1457_10.0390.0030.0233.121.7683.459
16131_A1477:U1876_1-0.612-0.4380.5723.373-3.741-2.182
16171_A1481:C1872_1-3.543-0.955-0.0411.72511.829-95.181
16281_A1490:A1839_11.7770.9470.16326.14549.088-175.818
16291_A1491:U1837_1-0.485-0.115-0.27-13.184-5.5742.397
16351_A1498:U1518_10.1560.0410.55812.483-9.7197.523
16401_A1506:U1512_1-0.235-0.1190.3612.142-12.297-1.168
16411_A1524:U1834_1-4.347-2.4-0.474-15.986-5.301-94.58
16441_A1529:U1831_10.594-0.1560.802-4.098-23.891-0.582
16491_A1535:G1586_1-6.845-4.5330.29227.282-22.827-3.664
16511_A1537:U1584_10.08-0.13-0.388-21.202-23.9575.869
16531_A1539:U1553_1-3.953-1.691.026-9.7513.957-100.073
16651_A1566:A1571_10.5611.7-0.78615.0629.273-14.305
16661_A1605:U1600_1-4.218-2.477-0.552.9972.467-83.543
16711_A1612:U1595_1-0.113-0.0321.0619.5224.45716.998
16721_A1613:U1526_10.4590.053-0.689-6.949-8.55-2.588
16781_A1619:G1825_10.5441.314-2.093-32.089-23.767.086
16791_A1621:U1824_10.4410.6170.8491.794-14.65115.269
16831_A1625:U1818_10.2580.161-0.17315.495-6.901-19.962
17001_A1632:U1641_10.252-0.215-0.789-34.27312.7360.47
16891_A1647:U2559_1-0.683-0.0610.5349.40817.72111.14
16901_A1648:G1807_1-7.253-4.6510.601-1.496-5.896-1.354
16961_A1654:U1801_10.24-0.01-0.1-13.141-16.8287.429
16981_A1656:A1799_1-6.2165.3790.264-8.7726.429-172.676
17271_A1683:U3071_1-4.812-0.7890.36426.33116.319-11.08
17501_A1707:U1737_1-0.456-0.235-0.3388.122-5.4070.519
17571_A1714:G1730_1-6.728-4.3830.061-26.91127.5446.327
17371_A1749:A1696_1-6.3885.1770.283-2.2528.33-175.935
17381_A1750:U1695_1-4.472-2.5560.826-4.04925.277-91.788
17391_A1752:U1694_1-0.51-0.0850.18316.331.194.545
17441_A1757:U1768_10.4120.162-0.467-1.961-11.719-0.801
17211_A1787:G1662_10.1181.148-0.681-16.198-32.186-15.777
16181_A1859:U1871_10.388-0.256-0.309-12.901-7.9581.411
12941_A1881:U2351_10.204-0.147-0.1463.927-4.362.687
12961_A1883:U2349_10.1090.057-0.505-16.653-21.324-13.741
17641_A1887:A2348_1-6.18-4.4760.296-2.649-11.614-10.218
17681_A1891:U2344_1-0.4130.245-0.121-4.524-5.768-3.603
17701_A1893:U2342_1-0.1880.083-0.016-4.158-6.3544.565
17721_A1895:U2340_10.746-0.121-0.07120.08811.6884.043
17731_A1896:C2339_1-0.084-0.931-0.3726.871-11.516164.056
17761_A1901:U2336_10.245-0.071-0.35-6.4312.2478.448
17801_A1915:U1937_1-0.462-0.309-0.026.806-18.963.066
17851_A1921:A1930_15.829-4.978-0.47910.825-18.924175.148
17861_A1922:G1929_1-6.698-4.210.794.652-11.933-5.26
17921_A2104:U1944_1-0.369-0.548-0.0028.707-2.684-9.193
17941_A2106:U1942_10.0870.0970.5444.312-10.2055.676
17951_A2107:C1941_1-2.112-0.1910.343-3.176-17.3622.913
18081_A2125:U2328_1-0.145-0.191-0.0344.41-0.4535.969
18091_A2126:U2327_1-0.059-0.3390.1186.7335.4634.468
18141_A2131:A2320_13.157-3.2220.45712.40319.093-79.585
18311_A2149:G2187_1-5.904-3.8160.03843.054-35.7153.96
18341_A2152:U2184_1-0.1260.010.59910.484-1.7760.689
18401_A2158:U2176_10.1341.820.00714.14221.802172.839
18451_A2164:U2170_10.409-0.277-0.081-3.1064.3985.931
18151_A2188:U1925_1-0.0450.114-0.35916.022-16.2415.305
18671_A2219:U2226_10.6570.249-0.147-11.892-8.1827.103
18681_A2220:U2225_10.255-0.4-0.4452.122-16.158-1.994
18521_A2244:U2200_10.532-0.4790.6642.66-9.849-1.01
18711_A2262:U2254_1-5.066-2.181-2.1379.0392.846-39.931
18581_A2275:G2311_1-6.824-4.086-0.1873.12-2.627-6.508
18831_A2291:U2301_10.183-0.1440.165-3.98-15.9075.519
12731_A2361:G2377_1-0.6441.396-0.0129.517-14.696-16.027
12001_A2367:U2380_10.202-0.2090.485.3487.8745.557
12011_A2368:U2379_10.068-0.073-0.205-3.384-17.1896.633
12681_A2372:U642_1-5.001-0.3741.308-8.3245.50130.223
19041_A2398:U2981_10.546-0.13-0.056-6.5961.981.641
19051_A2399:U2980_10.463-0.104-0.295-11.75-4.93-3.805
19611_A2511:U2436_10.256-0.509-0.479-8.779-20.2725.993
19641_A2515:G2592_1-6.777-4.1020.5729.179-0.819-3.334
19681_A2519:U2588_1-0.585-0.1980.6830.538-6.1234.603
19691_A2520:U2587_10.0-0.0020.1338.219-23.1869.255
19741_A2529:U2581_10.0980.2230.1621.645-0.4094.883
19791_A2535:U2544_1-2.337-0.356-0.776-5.345-3.642-27.705
19821_A2561:A2580_15.691-5.1530.3084.68316.043175.075
19831_A2562:G2579_1-7.191-4.7120.2083.754-16.902-8.307
19121_A2601:U2428_10.031-0.301-0.1333.302-21.11117.229
19191_A2609:U2421_1-0.658-0.4420.6312.873-11.6062.79
14451_A2637:A1055_16.113-5.129-0.5438.597-9.86174.323
19951_A2642:A2635_16.015-5.3210.32219.095-28.446168.872
19961_A2643:U2634_1-6.293-2.182-0.303-0.087-20.481-25.393
19991_A2647:U2631_10.271-0.4-0.251-0.807-0.4172.048
110011_A2649:U2629_1-0.0660.07-0.156-8.608-13.1857.176
110081_A2656:U2713_10.1641.143-0.39717.727-22.45172.45
110181_A2667:G2687_1-6.692-4.558-0.022-14.999-5.109-8.199
110221_A2671:U2683_10.0220.1070.079.381-3.764-0.32
110241_A2673:U2681_1-0.799-0.211-0.529-6.463-1.1988.326
110261_A2692:U2701_10.6380.12-0.161-8.98-2.625-3.402
110061_A2694:U2652_1-0.125-0.084-1.061-29.885-6.5537.122
110071_A2695:U2759_10.148-0.0810.12413.11521.1765.734
110331_A2733:U2723_10.311-0.0080.0993.92-6.016-0.465
110341_A2734:U2722_10.06-0.3040.07-3.966-9.4654.731
110361_A2736:G2720_1-0.5891.548-0.323-14.01714.73-12.234
110381_A2738:U2718_10.221-0.278-0.198-1.408-4.668-6.638
110391_A2739:U2717_10.562-0.167-0.503-6.833-8.26611.093
110401_A2740:U2716_10.2250.209-0.386-30.556-16.129-6.198
110431_A2743:U2750_10.152-0.284-0.036-11.599-14.699-5.978
110481_A2762:U2795_1-4.318-1.9240.049-15.645-10.346-99.541
11701_A2779:U310_1-0.367-0.181-0.167-2.193-6.9137.85
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13643sR_U1579:A1166_sR-0.9-0.3620.019-8.234-10.801-1.592
13647sR_U1582:U1613_sR2.1653.3860.54920.265-7.515178.55
13784sR_U1585:A1611_sR3.732-2.3060.0981.576-12.657-101.268
13794sR_U1595:A1600_sR0.5653.089-1.4027.56629.98163.186
13795sR_U1710:G1692_sR-1.116-0.51.26119.50626.63831.374
13808sR_U1723:A1678_sR0.492-0.296-0.28212.032-11.1952.4
13809sR_U1724:C1677_sR4.11-1.311-0.362.78-12.14116.345
13810sR_U1725:U1676_sR-2.799-2.3050.26-13.198-16.9512.091
13819sR_U1734:A1667_sR0.869-0.1230.914-12.4893.7624.207
13820sR_U1735:U1666_sR2.452-1.381-0.094-8.103-6.99-26.95
13823sR_U1738:G1663_sR1.77-0.5080.0680.821-12.841-5.509
13826sR_U1741:A1660_sR0.483-0.2520.040.36-15.8311.051
13827sR_U1742:A1659_sR0.1270.0710.0158.6150.4914.475
13828sR_U1743:G1658_sR2.69-0.657-0.176-1.0992.7517.323
13837sR_U1752:A1648_sR0.578-0.1340.501-0.478-6.8415.679
13842sR_U1758:U1643_sR2.731-1.411-0.614-20.849-19.144-26.391
13852sR_U1770:A1791_sR0.214-0.334-0.01-7.2142.052-5.512
13853sR_U1771:A1790_sR0.383-0.3180.0125.50.412-7.097
13857sR_U1775:G1786_sR1.67-0.366-0.105-2.491-13.9622.069

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.