A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 6HHQ  PDB ID: 6HHQ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
1411_A6C7:G152U153_44-0.354-1.1823.1722.8325.57150.287-1.7550.6033.0116.526-3.31750.649
1911_A11A12:U146U147_440.092-1.1962.8531.6261.67738.437-1.9930.0352.8022.544-2.46738.506
11011_A12A13:U145U146_44-0.549-0.9663.1331.3315.37230.085-2.821.2852.89510.24-2.53730.578
11111_A13C15:G144U145_440.87-2.2693.5134.5480.42642.38-3.169-0.7013.5610.587-6.2742.614
11311_A16G17:C142U143_440.478-1.5023.163-0.0639.6626.224-5.157-1.0042.46320.430.13427.917
11711_A20G21:A138U139_44-0.585-0.7493.0765.39211.55527.432-3.5092.092.41722.864-10.6730.2
15611_A34A35:A48U50_110.5091.422.9652.2392.839-97.265-0.9880.3732.924-1.8911.492-97.315
15711_A35C36:C47A48_11-0.554-2.592.981-0.857-7.052118.77-1.440.3143.076-4.0950.498118.9
17911_A65G110:C321U322_111.863-2.3383.936-11.42515.03481.248-2.176-1.7193.30511.4078.66883.041
16211_A66C68:G75G76_110.606-0.0742.736-1.07310.72761.242-0.484-0.6292.68210.4421.04462.093
17711_A77G64:A323A324_11-0.125-3.416-1.913102.193-119.94-31.9850.325-1.268-2.95466.12656.342-158.451
16411_A95G96:C90G91_112.125-1.5163.0778.4121.38846.629-1.999-1.973.3471.736-10.52347.359
16811_A99A100:A85U87_110.7940.543.2127.537-2.595-91.122-0.3280.6983.1651.8145.27-91.393
16911_A100G101:U84A85_111.816-2.615-1.416-143.193-104.439-167.2321.2610.972-1.41552.224-71.603-179.692
17511_A106A325:U78U79_113.2972.3922.562166.26-59.118-101.886-1.0122.1670.53829.69283.503-177.768
18411_A114A115:U153U154_112.894-0.9023.107-7.97917.47227.69-3.754-6.011.43932.07814.64933.592
18511_A122A123:U149G148_113.3372.8093.6196.0159.637-15.325-11.91312.2190.456-31.15119.443-19.056
19211_A130C131:G137U138_110.489-1.0453.047-0.6816.90432.401-2.878-0.9612.76212.1991.20333.116
19411_A157G158:C263G264_111.267-0.9913.813-3.4266.59960.106-1.35-1.4473.6276.5613.40660.521
19611_A159G160:U261U262_11-0.117-1.7523.002-6.1935.80126.744-4.804-1.0272.53612.15912.97928.035
110111_A165C166:G256U257_11-0.524-1.7583.4915.5647.99523.286-6.282.7692.56418.788-13.07625.215
112711_A222U223:G206U207_110.098-1.6243.2733.5653.21843.481-2.4830.2043.1494.329-4.79543.733
113911_A268U270:A295A296_112.419-1.9220.737110.767125.73-9.0390.7441.413-0.098-67.16259.169-167.601
114311_A273G274:C291U292_11-0.263-1.492.966-3.1796.46832.852-3.4950.0032.64611.2685.53833.612
17611_A325A77:A324U78_110.929-1.392-2.868-6.607-6.385151.126-0.74-0.458-2.861-3.2963.411151.221
13114_A349U22:A342A344_113.3690.862-2.54870.98-157.959111.084-0.178-1.959-1.766-79.525-35.735176.139
116911_A352U354:A365A366_112.22.1741.633-127.105117.796130.8690.861-1.3441.42959.10463.775177.214
117111_A355C356:G363G364_11-0.159-0.9753.554-5.4853.50557.771-1.205-0.1513.4953.6165.65858.105
13411_A369G404:C19U20_44-1.46-0.8942.826-5.1564.11934.043-2.0581.7532.8856.9548.70534.658
117311_A386A387:U382G383_111.907-1.2292.871.4866.36252.432-1.738-2.0622.7637.168-1.67552.809
117411_A387G388:U381U382_11-0.022-2.0873.089-1.5825.924.17-6.373-0.3622.51313.813.70324.919
117611_A389G390:C379U380_110.932-2.0893.3626.4375.46223.932-6.333-0.2682.96512.678-14.94125.357
117811_A391G392:G400A377_11-1.014-0.8594.095-4.1319.58699.928-0.7450.584.0546.2482.692100.327
113611_A395A399:A375A372_11-0.3750.1136.253-6.1613.76110.944-0.0170.0876.2642.2813.737111.1
113811_A397C403:G376A374_111.476-2.844-5.522-171.4659.01890.306-1.3091.441-5.0644.57286.936174.151
113711_A399A397:A374A375_11-0.147-0.0073.40.239-2.46-52.2490.177-0.1513.3972.7910.271-52.303
13811_A407A408:G15G16_44-0.861-0.5722.577-8.7728.66828.404-2.4230.2492.45516.70516.90530.915
13911_A408A409:C14G15_44-1.145-0.4412.7350.5651.83143.23-0.7471.5992.72.484-0.76743.27
14011_A409U410:A13C14_442.296-0.9394.218-1.90120.92658.588-2.12-2.3413.65820.6721.87861.926
14711_A416A417:U6U7_440.449-1.6193.4282.86917.49731.107-5.008-0.3452.2629.789-4.88535.697
14811_A417A418:U5U6_44-0.821-1.1212.998-1.7541.64931.447-2.3441.2132.9783.0363.23131.536
14911_A418G419:C4U5_440.202-1.3893.6413.9139.69932.883-3.9410.3043.12116.618-6.70534.463
118911_A428U429:A630U631_110.165-0.9093.393.59813.43233.593-3.3240.2352.83622.101-5.9236.281
119411_A433U434:G625U626_11-0.032-1.3093.4790.6314.99339.534-2.5210.1233.2967.345-0.92939.84
119711_A436G437:A622U623_110.597-1.873.3341.5743.23535.778-3.49-0.7433.1815.25-2.55535.952
120111_A498G499:C614U615_11-0.568-2.0743.008-4.064.12629.477-4.7560.3542.7518.0127.88330.028
120411_A501U502:A611U612_11-0.245-1.1633.4025.2472.14429.299-2.7151.5933.2184.189-10.25329.83
120711_A504G505:C586U587_11-0.462-1.7323.479-2.08312.03732.65-4.6930.4612.71420.5383.55434.802
121911_A516G517:C573U574_11-0.081-1.3783.2369.158.6932.569-3.5351.4372.67414.819-15.60434.866
122211_A521A522:A570U571_110.16-2.2153.1034.422-4.21339.753-2.7520.2623.309-6.151-6.45740.201
122311_A522A523:A569A570_110.868-3.0713.2791.2710.03534.796-5.137-1.2563.3040.059-2.12434.819
122411_A523U524:G568A569_112.076-2.6463.185-2.8787.96831.182-5.957-4.1672.26214.495.23532.284
122811_A527U528:G564U565_110.319-1.0613.285-3.5228.41648.214-1.9-0.6443.04110.1964.26749.019
123011_A529G530:C562U563_110.619-1.6143.7734.40816.78736.065-4.43-0.3652.83325.385-6.66539.899
123311_A532U556:A559G560_11-1.693-4.7720.892-118.88-107.37379.031-1.6370.0013.988-56.07662.086164.75
123511_A537G538:U553A554_11-0.437-0.5273.748-4.4566.02563.806-0.7910.1933.7115.684.20164.198
124311_A598C599:G604U605_11-0.527-1.2853.015-6.9010.66739.32-1.9540.033.040.98110.1639.903
124611_A649C650:G639U640_11-1.029-1.2082.9371.9659.65233.249-3.2751.9822.43916.424-3.34334.638
127711_A665A666:U796U797_110.711-1.1613.051-4.69116.18632.148-3.786-1.72.12427.0347.83536.193
127811_A666C667:G795U796_110.625-2.7173.4732.287.90426.245-7.566-0.7832.60316.888-4.87227.483
128411_A672U673:A789U790_110.42-1.4073.4512.06714.34631.981-4.437-0.3952.62224.525-3.53435.034
128711_A677G678:C702G703_11-2.044-3.3923.31285.398-123.13999.049-0.6891.7533.588-64.442-44.691160.563
129511_A706U707:G712U713_110.404-1.1563.1720.4867.6838.651-2.568-0.5462.90411.464-0.72539.381
129711_A736G737:C732G733_111.281-1.0283.2265.6170.47452.211-1.193-1.0793.3290.537-6.36152.494
129911_A738G739:C730U731_110.578-2.0183.3665.2314.3727.418-5.1530.033.0699.044-10.82528.236
130411_A744C745:G725G726_11-0.222-0.8883.551-3.658.68957.654-1.3990.0233.4048.9443.75758.354
130611_A746A747:U723U724_11-0.437-1.783.3041.3798.04834.092-4.1040.9232.80413.488-2.31135.028
130711_A747U748:G722U723_110.764-1.8363.4361.68111.4533.675-4.624-1.0132.72119.077-2.80235.554
131111_A751C752:G781U782_110.213-2.4393.620.343-0.79835.433-3.876-0.2933.674-1.311-0.56435.443
131511_A755U756:A775U777_111.319-1.7422.866-9.6513.56750.334-2.641-1.9692.09615.47211.00552.845
132111_A761U762:G769G770_110.512-1.6522.994-14.08910.59819.602-5.787-3.9941.30925.44933.8326.307
132411_A806A807:G934U935_11-3.338-2.2551.87111.106169.577149.693-1.3281.6831.16484.962-5.564177.374
132511_A807A808:U932G934_11-2.578-3.6942.70538.32-143.03-130.5792.271-1.1881.372.86419.521-166.797
132611_A808G809:C931U932_111.02-1.2653.574-11.142-10.153133.246-0.614-0.6363.574-5.5256.063133.674
132811_A810U811:A929U930_11-0.445-1.5263.167-4.9916.90430.155-4.039-0.0512.79412.9499.3631.308
133911_A820U821:A904U905_11-0.036-1.2123.4581.27614.7232.411-4.10.2422.67324.826-2.15235.538
134611_A827A828:U897U898_110.025-1.7093.1-0.131-2.49440.5-2.197-0.053.195-3.5990.18940.574
134711_A828U829:A895U897_11-0.73-1.553.1625.0367.14876.849-1.4350.7212.9865.733-4.03977.268
134811_A848C849:G844G845_111.968-0.4712.8842.919-0.68652.772-0.49-2.0422.987-0.771-3.28152.851
135811_A858G859:U834G835_11-1.7670.462.8270.14118.93843.481-0.8132.2152.78424.241-0.18147.243
136511_A866G867:U892C893_111.613-1.5633.072-7.8834.56554.961-1.91-2.1352.7084.9088.47655.653
137311_A876C877:A882U885_110.21-1.3923.217.9692.89185.005-1.0910.0233.1772.135-5.88585.346
138111_A965U966:U955U956_111.106-1.083.7055.17114.67147.262-2.485-0.8953.34717.747-6.25549.616
138311_A967G968:U1114U954_113.072-0.7292.204-14.2781.83449.92-0.902-4.0431.3122.12316.52551.826
138511_A970G971:U1110U1111_11-0.505-1.6322.8370.3942.822.047-5.1151.4342.6037.282-1.02622.225
138711_A972A973:U1108U1109_110.382-1.5893.213.6934.7529.411-3.998-0.0152.9489.234-7.17830.007
138811_A973G974:C1107U1108_111.637-2.2233.0080.9675.77116.441-10.231-4.9122.19619.398-3.25117.444
139411_A983U985:A1099U1100_11-1.413-0.9123.232-6.52914.447.997-2.081.2023.01517.1697.78450.388
139911_A989U990:G1059U1060_110.315-1.4643.111-1.5085.60637.779-2.885-0.6562.8598.5962.31238.207
140211_A992G993:U1056A1057_11-2.522-1.9382.9538.7117.48931.651-4.2545.4111.72713.198-15.35333.621
140611_A996A997:U1052A1053_11-0.625-0.9173.786-1.4036.58765.526-1.1510.5093.7016.0691.29365.833
140711_A997A998:U1050U1052_112.997-1.143.569-10.3942.51946.362-1.616-4.5482.8113.1513.047.513
140811_A998G999:C1049U1050_110.01-1.7343.3283.0485.71544.103-2.8040.2623.0867.562-4.03344.553
141211_A1006U1007:C1043U1044_110.319-0.8453.7712.83510.56150.464-1.785-0.1483.55112.223-3.28151.559
141511_A1009G1010:A1040U1041_11-1.571-2.8263.0071.61-1.97815.247-9.0387.0363.163-7.386-6.01415.457
141711_A1011G1012:C1038U1039_11-0.091-1.6853.3750.9342.40931.919-3.4950.3363.2394.372-1.69532.021
142811_A1064G1066:C1092U1096_11-3.267-0.7170.77265.932-142.091157.202-0.2971.6630.617-71.249-33.06175.414
143911_A1130C1132:G1126G1127_111.452-1.0253.102-3.0358.76164.388-1.291-1.4692.8938.1772.83364.981
144111_A1133G1134:U1124U1125_112.582-2.8093.084.74211.83614.036-13.159-5.9951.18339.398-15.78618.941
144311_A1135A1136:U1122U1123_110.124-2.343.2811.1155.15734.885-4.591-0.0462.9198.541-1.84635.269
144411_A1136C1137:U1121U1122_11-1.337-1.4813.2781.2111.80533.059-4.092.3862.56619.963-2.04735.068
145111_A1143U1368:A951A952_112.432-2.4640.352121.821127.785-166.9791.2171.230.362-63.90160.918-179.609
150711_A1203A1205:U1299A1301_11-1.3050.7066.833-6.3167.761-6.677-22.145-21.512.659-43.721-35.578-12.025
150811_A1205G1206:C1298U1299_110.615-2.1553.6013.7110.68633.8-5.104-0.4582.8617.772-6.16935.59
151411_A1212G1213:C1292U1293_110.692-2.3523.6117.0348.22127.703-6.3690.1732.89516.399-14.0329.703
151911_A1217U1218:A1287U1288_11-0.326-1.9883.0445.4951.52831.19-3.8961.5162.8482.811-10.11331.695
152111_A1223A1225:C1284G1285_110.369-0.5634.554-20.62117.05862.816-1.404-1.4184.0315.63918.90567.739
153211_A1231G1262:C1277A1278_11-0.7140.9394.90515.9516.15655.725-0.2871.9294.65516.542-16.33259.828
147911_A1317G1319:C1187U1188_11-1.854-3.690.27493.003-142.02263.224-1.3411.2641.906-73.044-47.833171.286
148711_A1326C1327:G1172U1173_111.266-1.8973.2613.1661.338.728-3.009-1.5163.2881.955-4.76338.873
149111_A1330A1332:U1167U1168_112.122-2.493.18-4.289-2.60374.61-1.974-1.8763.145-2.1463.53474.754
149211_A1332C1333:G1166U1167_11-0.686-1.8943.325-5.003-2.17229.57-3.1820.2413.518-4.219.69730.058
149711_A1337C1338:G1161U1162_110.359-1.9223.113.6498.14634.018-4.268-0.1092.61813.634-6.10835.137
150311_A1343G1344:C1360U1361_11-0.99-1.533.5915.0339.68731.774-4.2572.5492.83117.075-8.87133.551
145311_A1369G1370:C949G950_110.913-0.9863.757-0.97910.08860.54-1.504-0.9473.5549.9310.96461.303
145711_A1373G1374:C945U946_11-0.288-1.2223.2054.8982.83735.098-2.41.1583.0344.666-8.05735.537
146511_A1381G1382:C1424U1425_11-1.371-2.0843.11-1.8173.92328.07-5.0792.4112.8798.0283.71828.395
153811_A1393A1394:C1416G1417_110.3760.0143.122-7.6082.96425.976-0.669-2.5932.8826.39516.41727.208
153911_A1394G1395:U1415C1416_110.173-0.8293.22-6.8966.02654.762-1.232-0.5763.0796.57.43955.464
154511_A1401C1402:G1409U1410_11-0.424-2.3243.034-2.4343.48528.369-5.3910.3672.767.0614.93228.679
125211_A1435C1437:G658G659_111.647-0.4623.55-1.63817.74255.434-1.481-1.7913.23218.5461.71258.01
126411_A1449G1450:C2354G2355_111.452-0.2533.085-4.6735.05354.342-0.555-1.8382.9285.5075.09454.743
154911_A1467U1470:A1462U1463_111.715-2.1772.944-1.9432.28479.797-1.75-1.3822.8551.781.51479.844
155411_A1474A1475:U1457U1458_110.727-2.3223.119-2.2864.48830.844-5.074-1.7382.7028.3694.26331.243
155511_A1475G1476:U1877U1457_112.463-0.9813.4094.5118.56744.918-2.038-2.7473.39711.06-5.82545.897
155711_A1477C1478:G1875U1876_110.077-1.9753.5983.704-2.19934.365-2.940.5093.702-3.704-6.23834.626
156111_A1481A1859:U1871C1872_113.336-2.5753.714-6.85311.43584.232-2.184-2.6343.1848.4795.08185.085
156911_A1490A1491:U1837A1839_114.577-3.0182.6121.65727.709-22.8892.0538.1241.087-45.65935.685-41.763
157011_A1491G1492:C1836U1837_110.497-1.672.805-4.2610.77927.803-3.589-1.8612.6531.6088.828.132
157511_A1498C1499:G1517U1518_11-0.857-1.4093.130.6372.22630.064-3.1341.7693.0014.284-1.22530.151
158011_A1524C1527:G1833U1834_111.551-1.4843.03-9.683.01879.429-1.226-1.4372.812.3537.54679.967
158711_A1535G1536:C1585G1586_112.238-0.4314.308-4.53416.28153.67-1.648-2.7123.85417.5484.88756.079
158911_A1537G1538:A1583U1584_11-0.808-0.5413.242-3.837-3.13762.197-0.3790.6053.303-3.0313.70862.375
159111_A1539U1540:U1555U1553_11-1.04-3.8793.3653.55112.32489.247-2.9830.8052.8928.735-2.51789.971
160011_A1605C1608:G1599U1600_111.952-1.7773.2331.335-3.95775.887-1.325-1.5463.337-3.215-1.08575.984
160511_A1612A1613:U1526U1595_11-0.36-3.3423.63919.9945.57921.75-7.584.7041.80211.866-42.52629.979
160611_A1613C1614:G1525U1526_110.867-1.2233.211-6.5888.3143.19-2.334-1.7152.78711.0918.79344.412
161211_A1619A1621:U1824G1825_11-0.933-2.2524.01211.9896.80234.506-4.5633.2683.0510.941-19.28537.079
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13339sRsR_U1396U1397:A1401G1402_sRsR-2.698-1.3023.1634.10911.75546.299-2.4343.6162.54514.641-5.11847.856
13252sRsR_U1468A1469:G1170A1171_sRsR0.465-2.4793.45810.538-0.25429.373-4.5611.3183.437-0.481-19.98831.168
13351sRsR_U1496U1497:U1510U1511_sRsR-3.702-1.9773.1141.1984.78716.073-9.37113.3172.15716.619-4.15816.808
13352sRsR_U1497G1498:C1509U1510_sRsR0.94-2.2763.248-10.426.89643.724-3.507-2.062.6019.04113.66345.39
13258sRsR_U1560U1561:A1550U1551_sRsR-1.643-2.64-2.217124.092-124.46450.417-1.8870.257-0.303-63.095-62.906176.16
13259sRsR_U1561G1562:C1549A1550_sRsR-0.718-2.2243.466-7.8016.59729.325-5.45-0.1842.99512.5614.85231.017
13262sRsR_U1564C1565:G1546A1547_sRsR-0.821-1.6253.013-0.6488.20328.601-4.6391.4842.47916.1861.27929.737
13264sRsR_U1566U1567:U1544A1545_sRsR-0.284-1.6694.0-12.21114.9539.342-3.903-0.9743.14920.75916.95643.653
13237sRsR_U1578U1579:A1166G1167_sRsR-2.472-2.5663.310.4583.889.143-20.94314.9911.93123.009-2.7199.941
13238sRsR_U1579C1580:G1165A1166_sRsR-0.32-1.3313.107-3.8936.44835.645-2.9550.0142.84910.3916.27336.407
13359sRsR_U1585A1586:G1610A1611_sRsR4.719-0.9323.381-1.243-5.519-10.01912.80621.7123.00928.782-6.48-11.503
13369sRsR_U1710C1711:G1690G1692_sRsR-1.671-2.9565.687-10.75811.99433.439-7.3560.214.69519.50117.49137.018
13382sRsR_U1723U1724:C1677A1678_sRsR-0.158-1.8233.6672.297.09835.5-3.9920.5973.23811.485-3.70636.25
13383sRsR_U1724U1725:U1676C1677_sRsR-0.833-2.7163.281-3.22512.95312.628-13.4451.3830.49945.3911.30118.356
13384sRsR_U1725G1726:C1675U1676_sRsR0.051-1.4023.190.9953.15841.515-2.2920.0293.084.446-1.40141.641
13393sRsR_U1734U1735:U1666A1667_sRsR-1.794-1.4153.03110.26911.40839.465-2.9083.342.05516.171-14.55642.233
13394sRsR_U1735G1736:U1665U1666_sRsR3.235-2.083.376.1214.98715.809-10.112-6.4443.5516.832-20.6617.66
13397sRsR_U1738C1739:G1662G1663_sRsR0.117-1.6812.8555.4829.90630.646-4.3690.5542.20817.99-9.95632.624
13400sRsR_U1741U1742:A1659A1660_sRsR0.792-2.2553.107-0.5131.41923.158-6.059-2.1332.9473.5291.27723.206
13401sRsR_U1742U1743:G1658A1659_sRsR0.319-1.6813.4391.5051.02542.823-2.408-0.283.4081.403-2.0642.86
13402sRsR_U1743A1744:U1656G1658_sRsR-3.125-3.2043.665.95410.3941.454-14.51114.448-3.8672.112-41.30812.066
13411sRsR_U1752A1753:U1647A1648_sRsR0.379-1.1482.711.0984.5828.994-3.055-0.5572.5159.073-2.17529.366
13416sRsR_U1758C1759:G1642U1643_sRsR1.032-1.2533.23-3.41512.08124.277-5.313-2.9382.20626.5737.51227.288
13424sRsR_U1770U1771:A1790A1791_sRsR-0.1-1.363.121-0.75213.24529.357-4.5180.0632.3124.6131.39732.155
13425sRsR_U1771C1772:G1789A1790_sRsR0.586-1.9213.1631.3394.62533.207-4.035-0.8112.8988.04-2.32933.544
13429sRsR_U1775A1776:U1785G1786_sRsR0.804-1.5513.0140.91212.65227.659-5.06-1.3822.1424.874-1.79330.377

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.