A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 1-Apr-2020 number of released structures: 10687
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NDB ID: 6HMI  PDB ID: 6HMI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A1:U22_B0.630.1791.32944.6571.72685.39
13A_A3:U20_B-0.052-0.056-0.63-20.437-7.2053.425
17A_A7:U16_B0.125-0.079-0.4550.055-14.5172.679
14A_C4:G19_B0.26-0.105-0.187-0.545-5.567-1.901
18A_C8:G15_B0.715-0.218-0.101-1.802-8.7791.615
19A_C9:G13_B0.070.024-0.22720.053-9.71-2.862
15A_PSU5:A18_B-0.456-0.042-0.317.591-6.374-5.783
16A_PSU6:A17_B-0.234-0.057-0.26511.178-7.622-1.838
12A_U2:C21_B-1.205-1.60.049-17.938-8.1215.196
110A_U10:G12_B2.329-0.431-0.70726.318-14.4183.939

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.