A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6IPD  PDB ID: 6IPD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:8OG5_P-0.0594.6520.161-13.71919.265-84.838
17T_DA7:DT3_P0.025-0.1240.3278.248-14.8490.244
11T_DC1:DG4_D-0.115-0.0640.394-9.806-14.964-2.065
14T_DC4:DG1_D0.259-0.112-0.21511.9980.299-0.779
18T_DC8:DG2_P0.293-0.181-0.1612.681-11.063-0.781
12T_DG2:DC3_D-0.18-0.0170.098-0.747-11.051-0.369
13T_DG3:DC2_D-0.29-0.1780.2240.071-9.516-2.476
19T_DG9:DC1_P-0.125-0.0910.109-1.368-10.359-1.134
16T_DT6:DA4_P-0.038-0.111-0.0513.8331.792.203

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.