A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: 6IPD  PDB ID: 6IPD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA5DT6:DA48OG5_PP-0.1811.9052.994-1.4018.133-24.237-6.198-0.7362.233-18.69-3.218-25.583
16TT_DA7DC8:DG2DT3_PP-0.562-1.3163.2512.0083.61636.786-2.5441.1483.0795.707-3.16937.01
11TT_DC1DG2:DC3DG4_DD-0.2480.953.2764.0584.61334.9210.8731.0143.3227.614-6.69735.44
17TT_DC8DG9:DC1DG2_PP-0.787-1.3313.523-5.5866.9635.701-3.1150.4423.29611.1398.9436.765
12TT_DG2DG3:DC2DC3_DD0.416-0.063.316-2.7135.02334.44-0.867-1.1083.2358.4124.54434.895
13TT_DG3DC4:DG1DC2_DD0.4630.0283.0254.4593.00326.78-0.6420.063.0456.402-9.50627.305
15TT_DT6DA7:DT3DA4_PP0.085-1.2333.13-5.3563.76728.877-3.157-1.2222.8877.43310.56929.595

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.