A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 6IPE  PDB ID: 6IPE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:8OG5_P-0.0194.690.078-12.11221.171-83.854
17T_DA7:DT3_P0.073-0.1230.39510.031-14.1550.642
11T_DC1:DG4_D0.152-0.1550.442-9.343-13.522-0.673
14T_DC4:DG1_D0.33-0.109-0.22112.2370.46-1.052
18T_DC8:DG2_P0.288-0.147-0.09712.138-12.708-0.263
12T_DG2:DC3_D-0.115-0.0350.11-0.113-9.683-1.293
13T_DG3:DC2_D-0.231-0.1410.1630.604-9.669-3.184
19T_DG9:DC1_P-0.279-0.0830.154-1.258-11.514-0.444
16T_DT6:DA4_P-0.047-0.077-0.1062.2351.4531.945

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.