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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
6IPF
PDB ID:
6IPF
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
7
T_DA7:DT3_P
0.092
-0.088
0.303
8.842
-16.74
-1.204
1
1
T_DC1:DG4_D
-0.083
-0.116
0.441
-10.229
-17.452
-4.427
1
4
T_DC4:DG1_D
0.323
-0.117
-0.271
13.406
2.42
-1.152
1
5
T_DC5:8OG5_P
0.256
-0.112
0.191
-28.822
12.104
-1.355
1
8
T_DC8:DG2_P
0.338
-0.122
-0.208
12.061
-11.32
0.782
1
2
T_DG2:DC3_D
-0.166
-0.1
0.1
-0.684
-10.894
-0.569
1
3
T_DG3:DC2_D
-0.246
-0.165
0.22
0.652
-8.034
-2.363
1
9
T_DG9:DC1_P
-0.11
-0.068
0.173
-3.44
-11.266
-2.245
1
6
T_DT6:DA4_P
-0.08
-0.088
-0.067
3.4
5.281
0.356
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.