6IPF: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 6IPF PDB ID: 6IPF

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	7	T_DA7:DT3_P	0.092	-0.088	0.303	8.842	-16.74	-1.204
1	1	T_DC1:DG4_D	-0.083	-0.116	0.441	-10.229	-17.452	-4.427
1	4	T_DC4:DG1_D	0.323	-0.117	-0.271	13.406	2.42	-1.152
1	5	T_DC5:8OG5_P	0.256	-0.112	0.191	-28.822	12.104	-1.355
1	8	T_DC8:DG2_P	0.338	-0.122	-0.208	12.061	-11.32	0.782
1	2	T_DG2:DC3_D	-0.166	-0.1	0.1	-0.684	-10.894	-0.569
1	3	T_DG3:DC2_D	-0.246	-0.165	0.22	0.652	-8.034	-2.363
1	9	T_DG9:DC1_P	-0.11	-0.068	0.173	-3.44	-11.266	-2.245
1	6	T_DT6:DA4_P	-0.08	-0.088	-0.067	3.4	5.281	0.356

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.