A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6IPF  PDB ID: 6IPF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_DA7:DT3_P0.092-0.0880.3038.842-16.74-1.204
11T_DC1:DG4_D-0.083-0.1160.441-10.229-17.452-4.427
14T_DC4:DG1_D0.323-0.117-0.27113.4062.42-1.152
15T_DC5:8OG5_P0.256-0.1120.191-28.82212.104-1.355
18T_DC8:DG2_P0.338-0.122-0.20812.061-11.320.782
12T_DG2:DC3_D-0.166-0.10.1-0.684-10.894-0.569
13T_DG3:DC2_D-0.246-0.1650.220.652-8.034-2.363
19T_DG9:DC1_P-0.11-0.0680.173-3.44-11.266-2.245
16T_DT6:DA4_P-0.08-0.088-0.0673.45.2810.356

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.