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As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6J4F  PDB ID: 6J4F 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18C_DA9:DT8_D-0.052-0.0190.59714.502-15.5440.479
111C_DA12:DT5_D-0.413-0.165-0.0073.731-8.4262.353
12C_DC3:DG14_D0.3230.030.1055.994-7.8132.354
13C_DC4:DG13_D0.31-0.1010.214-4.032-17.6676.729
19C_DC10:DG7_D0.308-0.280.1763.339-12.968-1.189
110C_DC11:DG6_D-0.133-0.1750.101-6.904-5.1271.665
113C_DC14:DG3_D-0.015-0.092-0.2861.741-12.6471.672
11C_DG2:DC15_D-0.152-0.025-0.0026.634-6.302-1.484
17C_DG8:DC9_D-0.314-0.0520.15813.206-7.112-3.531
112C_DG13:DC4_D-0.207-0.070.0473.579-7.255-1.405
114C_DG15:DC2_D0.053-0.323-0.0722.569-4.1544.267
14C_DT5:DA12_D-0.031-0.2690.24-1.973-9.2520.081
15C_DT6:DA11_D-0.007-0.2430.1860.389-9.930.294
16C_DT7:DA10_D-0.245-0.0160.008-4.524-5.9585.852
122G_DA9:DT8_H0.224-0.0860.147.741-9.8413.461
125G_DA12:DT5_H-0.0640.0360.213.0880.4993.231
116G_DC3:DG14_H0.440.146-0.369.418-6.3582.019
117G_DC4:DG13_H-0.2040.0070.632-10.384-13.495.097
123G_DC10:DG7_H0.122-0.2490.0044.448-14.738-2.632
124G_DC11:DG6_H-0.098-0.1720.456-11.909-7.2651.682
127G_DC14:DG3_H1.1150.098-0.09314.353-20.15210.903
115G_DG2:DC15_H-0.245-0.2070.4011.063-5.251-4.707
121G_DG8:DC9_H-0.075-0.1080.46419.51-5.908-1.063
126G_DG13:DC4_H0.5720.190.23311.042-9.3548.117
128G_DG15:DC2_H-0.338-0.1970.3026.637-11.4995.705
118G_DT5:DA12_H-0.5550.1060.33-2.269-7.0020.086
119G_DT6:DA11_H0.149-0.212-0.0390.752-22.083-2.806
120G_DT7:DA10_H-0.14-0.2380.1230.817-7.6389.809

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.