6J4F: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6J4F PDB ID: 6J4F

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	C_DA9:DT8_D	-0.052	-0.019	0.597	14.502	-15.544	0.479
1	11	C_DA12:DT5_D	-0.413	-0.165	-0.007	3.731	-8.426	2.353
1	2	C_DC3:DG14_D	0.323	0.03	0.105	5.994	-7.813	2.354
1	3	C_DC4:DG13_D	0.31	-0.101	0.214	-4.032	-17.667	6.729
1	9	C_DC10:DG7_D	0.308	-0.28	0.176	3.339	-12.968	-1.189
1	10	C_DC11:DG6_D	-0.133	-0.175	0.101	-6.904	-5.127	1.665
1	13	C_DC14:DG3_D	-0.015	-0.092	-0.286	1.741	-12.647	1.672
1	1	C_DG2:DC15_D	-0.152	-0.025	-0.002	6.634	-6.302	-1.484
1	7	C_DG8:DC9_D	-0.314	-0.052	0.158	13.206	-7.112	-3.531
1	12	C_DG13:DC4_D	-0.207	-0.07	0.047	3.579	-7.255	-1.405
1	14	C_DG15:DC2_D	0.053	-0.323	-0.072	2.569	-4.154	4.267
1	4	C_DT5:DA12_D	-0.031	-0.269	0.24	-1.973	-9.252	0.081
1	5	C_DT6:DA11_D	-0.007	-0.243	0.186	0.389	-9.93	0.294
1	6	C_DT7:DA10_D	-0.245	-0.016	0.008	-4.524	-5.958	5.852
1	22	G_DA9:DT8_H	0.224	-0.086	0.14	7.741	-9.841	3.461
1	25	G_DA12:DT5_H	-0.064	0.036	0.21	3.088	0.499	3.231
1	16	G_DC3:DG14_H	0.44	0.146	-0.36	9.418	-6.358	2.019
1	17	G_DC4:DG13_H	-0.204	0.007	0.632	-10.384	-13.49	5.097
1	23	G_DC10:DG7_H	0.122	-0.249	0.004	4.448	-14.738	-2.632
1	24	G_DC11:DG6_H	-0.098	-0.172	0.456	-11.909	-7.265	1.682
1	27	G_DC14:DG3_H	1.115	0.098	-0.093	14.353	-20.152	10.903
1	15	G_DG2:DC15_H	-0.245	-0.207	0.401	1.063	-5.251	-4.707
1	21	G_DG8:DC9_H	-0.075	-0.108	0.464	19.51	-5.908	-1.063
1	26	G_DG13:DC4_H	0.572	0.19	0.233	11.042	-9.354	8.117
1	28	G_DG15:DC2_H	-0.338	-0.197	0.302	6.637	-11.499	5.705
1	18	G_DT5:DA12_H	-0.555	0.106	0.33	-2.269	-7.002	0.086
1	19	G_DT6:DA11_H	0.149	-0.212	-0.039	0.752	-22.083	-2.806
1	20	G_DT7:DA10_H	-0.14	-0.238	0.123	0.817	-7.638	9.809

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.