A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: 6J4F  PDB ID: 6J4F 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
18CC_DA9DC10:DG7DT8_DD0.008-0.7273.5460.164-1.44935.186-0.9670.0133.572-2.395-0.2735.215
111CC_DA12DG13:DC4DT5_DD-0.503-0.0863.215-3.3575.03135.354-0.8530.3423.2058.215.47835.852
12CC_DC3DC4:DG13DG14_DD0.451-0.2433.4140.6871.41238.49-0.551-0.5963.4112.141-1.04238.52
13CC_DC4DT5:DA12DG13_DD-0.58-0.1873.3111.1299.82231.554-1.9971.2123.09317.531-2.01633.029
19CC_DC10DC11:DG6DG7_DD0.221-0.7453.463.4526.72132.13-2.4980.223.24811.938-6.13132.983
110CC_DC11DA12:DT5DG6_DD0.2610.973.1670.05410.13130.143-0.119-0.4673.31218.824-0.131.763
113CC_DC14DG15:DC2DG3_DD0.4321.4223.2970.3156.46639.8511.301-0.5893.489.411-0.45940.352
11CC_DG2DC3:DG14DC15_DD0.153-0.0733.381-0.896-2.42235.6990.242-0.3823.374-3.9441.45935.789
17CC_DG8DA9:DT8DC9_DD0.381-0.283.205-4.247-5.73542.3140.176-0.9363.164-7.8775.83342.884
112CC_DG13DC14:DG3DC4_DD-0.058-0.2883.383.5340.00436.941-0.4530.5793.3610.006-5.56137.104
14CC_DT5DT6:DA11DA12_DD0.11-0.3223.2651.836-3.52133.5010.0190.113.282-6.081-3.17133.729
15CC_DT6DT7:DA10DA11_DD1.3080.3363.3297.5216.47734.02-0.468-0.9653.53210.789-12.52735.397
16CC_DT7DG8:DC9DA10_DD-0.721.1383.007-0.4769.92328.6830.2151.2833.22419.3120.92630.32
121GG_DA9DC10:DG7DT8_HH-0.169-0.7233.359-1.194-1.78934.415-0.9330.0933.395-3.022.01534.481
124GG_DA12DG13:DC4DT5_HH-0.6830.4133.14-0.5178.79836.556-0.4790.9953.16113.7810.8137.568
115GG_DC3DC4:DG13DG14_HH0.317-0.4663.703-5.7646.5834.738-1.812-1.4393.46510.8099.46935.789
116GG_DC4DT5:DA12DG13_HH-0.604-0.3353.1781.9195.06130.46-1.5681.4883.0419.538-3.61730.925
122GG_DC10DC11:DG6DG7_HH0.266-0.9313.654-0.9387.47832.111-3.021-0.6423.34913.2921.66632.961
123GG_DC11DA12:DT5DG6_HH0.4061.53.0741.6620.93439.6122.107-0.4153.1211.378-2.45139.656
126GG_DC14DG15:DC2DG3_HH-0.2831.6283.516-1.6020.67436.8942.4720.2133.5531.0642.52936.934
114GG_DG2DC3:DG14DC15_HH0.4660.0963.2385.74-1.98535.170.4450.0713.261-3.255-9.41235.674
120GG_DG8DA9:DT8DC9_HH0.464-0.2593.4721.732-2.05140.964-0.132-0.463.496-2.926-2.47241.048
125GG_DG13DC14:DG3DC4_HH0.5730.3123.2443.2642.46532.6490.128-0.4523.2984.364-5.77832.897
117GG_DT5DT6:DA11DA12_HH-0.241-0.3163.1513.666-0.47337.731-0.4290.8213.118-0.73-5.65337.905
118GG_DT6DT7:DA10DA11_HH1.5930.5613.3155.0012.82533.8350.484-1.8733.5414.81-8.51734.305
119GG_DT7DG8:DC9DA10_HH-0.7391.0083.005-3.1476.70331.2930.6660.7933.20412.2135.73432.136

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.