A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6J9A  PDB ID: 6J9A 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA1:DT14_C0.144-0.222-0.3675.148-13.39710.735
18B_DA8:DT7_C-0.014-0.1480.054-0.37-3.2357.089
112B_DA12:DT3_C0.088-0.176-0.652-5.215-9.3184.197
14B_DC4:DG11_C0.162-0.110.174-5.249-4.4280.803
17B_DC7:DG8_C0.112-0.1670.706-1.014-6.061-2.286
16B_DG6:DC9_C-0.154-0.120.3843.148-3.414-1.046
110B_DG10:DC5_C-0.208-0.079-0.1641.681-8.2855.007
111B_DG11:DC4_C0.304-0.3160.25516.936-8.791-8.992
12B_DT2:DA13_C0.009-0.185-0.1451.618-11.5277.389
13B_DT3:DA12_C-0.095-0.0890.279-2.596-9.48-1.453
15B_DT5:DA10_C0.039-0.2170.183-1.56-0.6294.513
19B_DT9:DA6_C-0.259-0.135-0.0236.825-6.146-1.525
113B_DT13:DA2_C-0.056-0.239-0.5912.493-7.6095.734
114B_DT14:DA1_C-0.105-0.198-0.183.783-7.22311.633

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.