A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6J9A  PDB ID: 6J9A 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11BB_DA1DT2:DA13DT14_CC-0.263-0.4053.326-2.369-1.18831.818-0.5160.0393.348-2.1634.31131.925
18BB_DA8DT9:DA6DT7_CC-1.064-0.1793.2350.0360.96527.593-0.6072.2383.2252.023-0.07527.61
112BB_DA12DT13:DA2DT3_CC0.4920.0823.0411.478-2.2629.3880.61-0.6733.047-4.443-2.90529.509
14BB_DC4DT5:DA10DG11_CC0.612-0.5023.1474.8984.56831.189-1.717-0.2543.1018.375-8.98131.883
17BB_DC7DA8:DT7DG8_CC0.3990.1323.2539.574-0.36246.2720.1940.2893.268-0.455-12.03247.2
16BB_DG6DC7:DG8DC9_CC0.664-1.0653.477-1.1210.11122.342-2.789-2.1533.4340.2872.8922.37
110BB_DG10DG11:DC4DC5_CC-1.0221.7193.304-8.812-2.75945.1222.4430.533.332-3.55211.34346.009
111BB_DG11DA12:DT3DC4_CC0.736-0.3953.68512.633-3.3739.61-0.1390.5263.759-4.817-18.05541.63
12BB_DT2DT3:DA12DA13_CC-0.344-0.3343.369-2.017-1.95435.563-0.2520.2583.396-3.1943.29635.67
13BB_DT3DC4:DG11DA12_CC0.232-0.7823.1221.6531.36941.343-1.246-0.163.1031.937-2.3441.397
15BB_DT5DG6:DC9DA10_CC0.3450.9913.2140.9673.07733.5191.21-0.4393.2985.319-1.67333.669
19BB_DT9DG10:DC5DA6_CC1.211.7793.4216.2195.59637.7231.921-0.9743.7828.527-9.47638.607
113BB_DT13DT14:DA1DA2_CC0.7680.3613.276-0.673-0.69435.7710.688-1.3473.254-1.1291.09535.784

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.