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As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6J9B  PDB ID: 6J9B 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA2:DT13_B0.059-0.288-0.181-6.025-4.4339.405
15C_DA6:DT9_B0.11-0.2420.2462.513-11.4391.825
19C_DA10:DT5_B0.188-0.0910.3679.14-8.656-1.466
111C_DA12:DT3_B0.097-0.1910.0264.462-14.7882.837
112C_DA13:DT2_B0.039-0.149-0.027-1.633-17.7182.797
13C_DC4:DG11_B0.186-0.1290.0962.657-1.981-0.34
14C_DC5:DG10_B0.23-0.1930.0854.144-1.9072.564
18C_DC9:DG6_B0.075-0.255-0.1333.812-3.910.643
17C_DG8:DC7_B-0.715-0.2480.0690.144-5.7925.449
110C_DG11:DC4_B-0.244-0.186-0.0078.032-10.3123.152
12C_DT3:DA12_B-0.121-0.1220.142-0.256-2.777-0.694
16C_DT7:DA8_B-0.113-0.1220.292-1.217-7.1412.195
113C_DT14:DA1_B-0.106-0.236-0.046-2.63-18.1488.076
114F_DA1:DT14_E0.077-0.4940.118-13.167-19.89512.905
115F_DA2:DT13_E0.087-0.26-0.1-4.382-6.31410.243
119F_DA6:DT9_E0.088-0.1950.1532.646-5.661-0.658
123F_DA10:DT5_E0.058-0.170.2885.025-7.6911.536
125F_DA12:DT3_E0.108-0.165-0.010.675-15.1040.331
126F_DA13:DT2_E0.039-0.15-0.232-1.526-14.0165.96
117F_DC4:DG11_E0.202-0.1770.1480.412-8.273-0.96
118F_DC5:DG10_E0.17-0.172-0.0583.243-3.5030.892
122F_DC9:DG6_E0.235-0.195-0.033.226-1.6971.343
121F_DG8:DC7_E-0.253-0.136-0.095-6.27-6.8960.32
124F_DG11:DC4_E-0.208-0.1480.1428.767-11.9532.549
116F_DT3:DA12_E-0.14-0.1150.2550.115-7.5440.951
120F_DT7:DA8_E-0.09-0.1420.0212.539-5.2344.338
127F_DT14:DA1_E-0.033-0.268-0.1072.725-14.2268.121

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.