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As of 4-Dec-2019 number of released structures: 10490
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NDB ID: 6J9B  PDB ID: 6J9B 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11CC_DA2DT3:DA12DT13_BB-1.22-0.4313.112-3.9293.72129.084-1.6081.5843.1677.337.73929.573
15CC_DA6DT7:DA8DT9_BB0.603-0.7863.464-0.638-1.10132.878-1.189-1.1813.476-1.9441.12732.902
19CC_DA10DG11:DC4DT5_BB-0.168-0.0583.366-0.5662.74731.29-0.6370.2023.3515.0811.04731.413
111CC_DA12DA13:DT2DT3_BB-0.134-0.0973.311-1.69-2.22736.8070.151-0.023.314-3.5212.67236.909
112CC_DA13DT14:DA1DT2_BB0.163-0.4033.1750.697-1.68930.178-0.439-0.1753.195-3.241-1.33730.232
13CC_DC4DC5:DG10DG11_BB1.3460.7343.3885.8564.57632.5040.452-1.2873.6358.045-10.29533.32
14CC_DC5DA6:DT9DG10_BB-1.0860.8733.296-4.6724.15137.0680.7911.0513.4766.4737.28537.573
18CC_DC9DA10:DT5DG6_BB-0.9190.7253.051-6.0964.99136.320.4910.6533.2267.8939.6437.137
17CC_DG8DC9:DG6DC7_BB-0.120.0413.5030.546-2.51834.4210.4870.2933.489-4.247-0.92134.514
110CC_DG11DA12:DT3DC4_BB-0.202-0.013.216-1.432.59744.462-0.2480.1373.2153.4271.88844.556
12CC_DT3DC4:DG11DA12_BB-0.03-0.0643.130.2656.75738.191-0.8870.0763.07410.229-0.40238.763
16CC_DT7DG8:DC7DA8_BB-0.132-0.3443.363-0.346-4.22638.3680.0180.1563.381-6.4070.52538.592
113FF_DA1DA2:DT13DT14_EE0.0830.0553.0652.4626.23831.852-0.9260.2573.01811.212-4.42432.533
114FF_DA2DT3:DA12DT13_EE-0.96-0.3353.178-4.3282.30728.526-1.1750.9733.2484.6398.70228.936
118FF_DA6DT7:DA8DT9_EE0.832-0.5293.3361.0440.44429.322-1.141-1.4133.3550.876-2.06129.344
122FF_DA10DG11:DC4DT5_EE-0.026-0.0993.235-1.353.71130.602-0.898-0.213.1996.9942.54530.85
124FF_DA12DA13:DT2DT3_EE-0.007-0.0823.2341.072-2.11839.0970.1290.1373.232-3.161-1.639.167
125FF_DA13DT14:DA1DT2_EE0.523-0.5553.122-0.42-0.28229.054-1.046-1.133.12-0.5620.83729.058
116FF_DC4DC5:DG10DG11_EE1.1250.693.2816.1943.46233.3660.603-0.8913.485.947-10.63834.091
117FF_DC5DA6:DT9DG10_EE-0.8610.9523.365-4.7965.4337.8860.7270.6723.5428.277.30538.548
121FF_DC9DA10:DT5DG6_EE-1.1550.8113.174-6.8252.60736.8730.9160.8943.3754.07310.66137.565
120FF_DG8DC9:DG6DC7_EE0.3490.0933.186-1.05-0.81434.2640.282-0.7533.171-1.3811.78234.289
123FF_DG11DA12:DT3DC4_EE-0.336-0.0443.335-0.513.97739.429-0.5390.4353.3195.8750.75439.624
115FF_DT3DC4:DG11DA12_EE0.1180.0683.1981.6514.88139.128-0.4640.0163.1867.25-2.45339.452
119FF_DT7DG8:DC7DA8_EE-0.3380.1483.629-1.586-4.66643.1080.7030.2873.604-6.3262.1543.375

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.