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NDB ID: 6J9C  PDB ID: 6J9C 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11B_DA2:DT15_C0.078-0.0510.3660.179-10.5412.836
18B_DA9:DT8_C-0.025-0.15-0.177-9.745-7.1991.087
112B_DA13:DT4_C0.062-0.1730.045.144-9.3210.689
14B_DC5:DG12_C0.211-0.104-0.073-4.576-7.1012.939
17B_DC8:DG9_C0.201-0.1340.2543.464-4.9071.643
16B_DG7:DC10_C-0.214-0.1440.4130.632-0.4451.574
110B_DG11:DC6_C-0.243-0.131-0.023-3.739-2.8913.273
111B_DG12:DC5_C-0.221-0.0690.0780.204-5.467-1.0
12B_DT3:DA14_C-0.089-0.1290.07-1.835-14.4072.453
13B_DT4:DA13_C-0.092-0.209-0.037-6.084-11.0192.171
15B_DT6:DA11_C0.023-0.0870.155-3.332-5.05-0.171
19B_DT10:DA7_C-0.117-0.207-0.054-4.938-7.579-1.973
113B_DT14:DA3_C-0.072-0.112-0.4317.249-14.1793.144
114E_DA2:DT15_F0.054-0.079-0.118-2.838-14.9170.09
121E_DA9:DT8_F0.245-0.060.644-1.763-7.801-1.386
125E_DA13:DT4_F0.098-0.1890.091-3.398-13.2682.313
117E_DC5:DG12_F0.181-0.189-0.514-4.077-6.0022.064
120E_DC8:DG9_F0.191-0.1440.119-0.592-8.812-1.052
119E_DG7:DC10_F-0.249-0.159-0.213-3.021-6.6131.173
123E_DG11:DC6_F-0.266-0.1330.11-2.675-8.7283.355
124E_DG12:DC5_F-0.229-0.1660.147-2.916-9.5-0.572
115E_DT3:DA14_F-0.133-0.0880.112-2.38-18.5492.712
116E_DT4:DA13_F-0.113-0.159-0.235-6.592-15.0013.493
118E_DT6:DA11_F-0.071-0.154-0.178-2.813-7.3480.872
122E_DT10:DA7_F-0.124-0.1840.348-1.286-7.942-0.856
126E_DT14:DA3_F-0.113-0.189-0.036-6.211-16.0393.108
127E_DT15:DA2_F-0.024-0.17-0.4-8.013-9.287-0.842

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.