A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6JCX  PDB ID: 6JCX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14H_DA6:DT22_G0.5450.1370.3548.267-21.8628.087
111H_DA13:DT15_G0.044-0.109-0.2425.1382.1952.668
115H_DA18:U4_I0.013-0.113-0.194-3.399-2.8243.058
13H_DC5:DG23_G0.149-0.110.4561.551-3.007-1.229
16H_DC8:DG20_G0.223-0.1070.118-6.659-11.9562.14
17H_DC9:DG19_G0.183-0.1020.111-7.726-8.1012.324
113H_DC16:G6_I0.151-0.126-0.34512.033-8.931.901
12H_DG4:DC24_G-0.249-0.201-0.396-1.446-2.4991.885
18H_DG10:DC18_G-0.203-0.086-0.506-6.296-1.0892.047
110H_DG12:DC16_G-0.208-0.132-0.152-3.5086.491.931
114H_DG17:C5_I-0.442-0.43-0.033-5.562-13.1778.011
116H_DG19:C3_I-0.162-0.1520.0056.9291.197-1.099
117H_DG20:C2_I-0.199-0.10.26712.04-2.754-1.971
11H_DT3:DA25_G-0.139-0.349-0.881-5.5540.4294.975
15H_DT7:DA21_G-0.2-0.1260.038-0.124-20.123-3.115
19H_DT11:DA17_G-0.079-0.184-0.085-3.737-1.4760.75
112H_DT15:A7_I-0.088-0.248-0.6880.2363.4661.207

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.