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As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
6JCX
PDB ID:
6JCX
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
4
H_DA6:DT22_G
0.545
0.137
0.354
8.267
-21.862
8.087
1
11
H_DA13:DT15_G
0.044
-0.109
-0.242
5.138
2.195
2.668
1
15
H_DA18:U4_I
0.013
-0.113
-0.194
-3.399
-2.824
3.058
1
3
H_DC5:DG23_G
0.149
-0.11
0.456
1.551
-3.007
-1.229
1
6
H_DC8:DG20_G
0.223
-0.107
0.118
-6.659
-11.956
2.14
1
7
H_DC9:DG19_G
0.183
-0.102
0.111
-7.726
-8.101
2.324
1
13
H_DC16:G6_I
0.151
-0.126
-0.345
12.033
-8.93
1.901
1
2
H_DG4:DC24_G
-0.249
-0.201
-0.396
-1.446
-2.499
1.885
1
8
H_DG10:DC18_G
-0.203
-0.086
-0.506
-6.296
-1.089
2.047
1
10
H_DG12:DC16_G
-0.208
-0.132
-0.152
-3.508
6.49
1.931
1
14
H_DG17:C5_I
-0.442
-0.43
-0.033
-5.562
-13.177
8.011
1
16
H_DG19:C3_I
-0.162
-0.152
0.005
6.929
1.197
-1.099
1
17
H_DG20:C2_I
-0.199
-0.1
0.267
12.04
-2.754
-1.971
1
1
H_DT3:DA25_G
-0.139
-0.349
-0.881
-5.554
0.429
4.975
1
5
H_DT7:DA21_G
-0.2
-0.126
0.038
-0.124
-20.123
-3.115
1
9
H_DT11:DA17_G
-0.079
-0.184
-0.085
-3.737
-1.476
0.75
1
12
H_DT15:A7_I
-0.088
-0.248
-0.688
0.236
3.466
1.207
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.