6JCX: Base Pair Morphology Parameters

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As of 11-Dec-2019 number of released structures: 10507

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NDB ID: 6JCX PDB ID: 6JCX

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	H_DA6:DT22_G	0.545	0.137	0.354	8.267	-21.862	8.087
1	11	H_DA13:DT15_G	0.044	-0.109	-0.242	5.138	2.195	2.668
1	15	H_DA18:U4_I	0.013	-0.113	-0.194	-3.399	-2.824	3.058
1	3	H_DC5:DG23_G	0.149	-0.11	0.456	1.551	-3.007	-1.229
1	6	H_DC8:DG20_G	0.223	-0.107	0.118	-6.659	-11.956	2.14
1	7	H_DC9:DG19_G	0.183	-0.102	0.111	-7.726	-8.101	2.324
1	13	H_DC16:G6_I	0.151	-0.126	-0.345	12.033	-8.93	1.901
1	2	H_DG4:DC24_G	-0.249	-0.201	-0.396	-1.446	-2.499	1.885
1	8	H_DG10:DC18_G	-0.203	-0.086	-0.506	-6.296	-1.089	2.047
1	10	H_DG12:DC16_G	-0.208	-0.132	-0.152	-3.508	6.49	1.931
1	14	H_DG17:C5_I	-0.442	-0.43	-0.033	-5.562	-13.177	8.011
1	16	H_DG19:C3_I	-0.162	-0.152	0.005	6.929	1.197	-1.099
1	17	H_DG20:C2_I	-0.199	-0.1	0.267	12.04	-2.754	-1.971
1	1	H_DT3:DA25_G	-0.139	-0.349	-0.881	-5.554	0.429	4.975
1	5	H_DT7:DA21_G	-0.2	-0.126	0.038	-0.124	-20.123	-3.115
1	9	H_DT11:DA17_G	-0.079	-0.184	-0.085	-3.737	-1.476	0.75
1	12	H_DT15:A7_I	-0.088	-0.248	-0.688	0.236	3.466	1.207

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.