A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 6JCX  PDB ID: 6JCX 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14HH_DA6DT7:DA21DT22_GG-0.437-0.2093.336-1.794-0.02832.587-0.3660.463.355-0.053.19532.635
114HH_DA18DG19:C3U4_II-0.281-0.6343.19-1.97610.80727.765-3.360.1562.76821.4853.92829.82
13HH_DC5DA6:DT22DG23_GG-0.6421.0523.213.76-2.39742.9271.6571.2293.085-3.265-5.12143.147
16HH_DC8DC9:DG19DG20_GG-0.1360.333.486-2.392-1.58930.2890.967-0.253.465-3.0334.56530.421
17HH_DC9DG10:DC18DG19_GG0.1410.4013.495-0.8012.98733.4850.17-0.3843.5125.1711.38733.623
112HH_DC16DG17:C5G6_II0.458-2.313.63-2.53314.32928.906-6.56-1.252.2226.6774.71632.292
12HH_DG4DC5:DG23DC24_GG0.6730.1593.322-4.0983.61630.055-0.42-2.0963.2016.9017.82130.536
18HH_DG10DT11:DA17DC18_GG0.023-0.8193.244-1.133.32432.44-2.024-0.2333.1445.9282.01532.624
110HH_DG12DA13:DT15DC16_GG0.351-0.7063.2365.2435.77127.616-2.6990.453.04311.795-10.71628.676
113HH_DG17DA18:U4C5_II-1.303-1.5493.188-2.8867.72231.256-4.0681.8622.8414.0295.24432.299
115HH_DG19DG20:C2C3_II-0.081-1.2863.033-3.1156.57734.763-2.969-0.2742.74810.865.14435.494
11HH_DT3DG4:DC24DA25_GG-0.3751.043.528-5.6214.7332.5830.939-0.3833.6518.2999.86333.379
15HH_DT7DC8:DG20DA21_GG0.6550.6913.585-0.423-4.06142.8621.377-0.9393.502-5.5420.57743.047
19HH_DT11DG12:DC16DA17_GG0.9290.0773.3743.40310.38335.193-1.36-0.9863.33616.682-5.46836.799
111HH_DT15DC16:G6A7_II0.107-1.0473.349-5.04613.2826.59-4.605-1.192.49626.59710.10630.087

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.