A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6JCY  PDB ID: 6JCY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13G_DA17:DT11_H0.096-0.2110.3961.9580.5861.998
17G_DA21:DT7_H0.077-0.0880.207-3.557-20.347-2.549
111G_DA25:DT3_H0.2950.336-0.2711.228-4.41422.583
12G_DC16:DG12_H0.204-0.1560.167-1.7964.041.609
14G_DC18:DG10_H0.18-0.06-0.052.4520.9190.25
110G_DC24:DG4_H0.241-0.277-0.9631.87-7.523.047
15G_DG19:DC9_H-0.165-0.1390.2566.572-2.2130.095
16G_DG20:DC8_H-0.175-0.0960.256.587-9.2010.855
19G_DG23:DC5_H-0.172-0.154-0.796-9.746-5.61-0.202
11G_DT15:DA13_H-0.096-0.139-0.173-5.083-0.0360.974
18G_DT22:DA6_H-0.104-0.1290.029-7.315-18.1393.904
115H_DA18:U4_I0.058-0.065-0.214-4.9860.3532.499
113H_DC16:G6_I0.178-0.104-0.0988.477-0.5182.608
114H_DG17:C5_I-0.242-0.172-0.182-8.561-9.4611.675
116H_DG19:C3_I-0.135-0.1440.2894.309-2.7170.082
117H_DG20:C2_I-0.172-0.1640.3123.695-4.781-1.381
112H_DT15:A7_I-0.125-0.162-0.305-2.5081.1481.939

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.