A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 6JCY  PDB ID: 6JCY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13GG_DA17DC18:DG10DT11_HH0.171-0.9233.2861.9961.02234.8-1.6960.0183.2631.706-3.33234.87
17GG_DA21DT22:DA6DT7_HH-0.247-0.2433.3380.265-3.39536.8130.0840.4263.344-5.362-0.41936.964
12GG_DC16DA17:DT11DG12_HH-0.426-0.5063.129-3.139.49832.764-2.2720.2582.90116.3695.39534.216
14GG_DC18DG19:DC9DG10_HH-0.392-0.0083.3480.4452.10631.39-0.4180.8073.3353.886-0.82231.462
110GG_DC24DA25:DT3DG4_HH1.3432.1723.517-1.045-6.8946.2083.329-1.7833.15-8.7211.32346.702
15GG_DG19DG20:DC8DC9_HH0.0040.2763.4011.841.32431.9150.2520.3393.4052.405-3.34231.993
16GG_DG20DA21:DT7DC8_HH-0.9740.9453.506-3.683-1.5243.5971.4250.9273.54-2.0424.94743.77
19GG_DG23DC24:DG4DC5_HH-0.5890.9752.956-0.151-1.77229.9042.2131.1122.897-3.430.29229.955
11GG_DT15DC16:DG12DA13_HH-0.28-0.813.385-7.2974.73932.216-2.221-0.7593.2228.35212.85933.34
18GG_DT22DG23:DC5DA6_HH0.4051.2253.57-0.022.37740.6751.47-0.5843.6333.4160.02940.742
114HH_DA18DG19:C3U4_II0.179-1.1263.114-1.9065.94928.894-3.366-0.7222.81411.753.76429.547
112HH_DC16DG17:C5G6_II0.504-2.2353.6310.539.77328.992-6.184-0.8512.75818.855-1.02330.566
113HH_DG17DA18:U4C5_II-0.859-1.8283.24-0.2276.49832.376-4.2521.4762.83511.510.40333.005
115HH_DG19DG20:C2C3_II0.093-1.5433.2520.7254.23533.217-3.351-0.0453.0397.37-1.26233.486
111HH_DT15DC16:G6A7_II0.157-1.3253.224-3.8336.09528.515-3.843-1.0842.84112.1317.62829.392

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.