A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6JQ6  PDB ID: 6JQ6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15U_A3:U17_U-0.2230.0310.1654.8-13.062-0.294
112U_A51:U44_U-0.1560.196-0.026-3.118-1.329-2.521
115U_A54:U41_U0.2440.0710.078-1.487-8.6871.449
118U_A57:U37_U0.667-0.25-0.016-4.209-19.182-1.799
120U_A60:U34_U-0.031-0.0670.62710.299-9.263-8.137
16U_C4:G16_U0.027-0.0560.0498.349-18.9921.071
123U_C64:G31_U0.114-0.219-0.46716.733-1.1611.152
18U_G6:C14_U0.04-0.311-0.145-4.59-12.1520.686
110U_G8:U39_U3.8840.965-0.7946.70425.77898.524
12U_G30:C20_U0.3274.1740.5276.4528.511147.27
111U_G50:C45_U0.3060.1650.4221.9160.243.444
116U_G55:C40_U-0.157-0.216-0.255-14.915-21.5490.332
121U_G61:C33_U0.181-0.395-0.157-5.364-28.5052.125
124U_G66:G63_U-2.023-3.2150.3158.535-7.56790.12
125U_G69:A72_U6.022-1.5271.831-41.6799.644-38.737
13U_U1:A19_U-0.364-0.2370.042-14.019-8.3473.149
14U_U2:A18_U-0.275-0.2760.434-7.1581.184-6.617
17U_U5:A15_U0.085-0.222-0.2196.933-15.1172.169
19U_U7:A11_U4.203-1.98-0.1040.468-0.642-100.352
11U_U28:A21_U4.283-2.4410.307-9.7956.097-94.105
113U_U52:A43_U0.124-0.110.292-8.609-11.3512.318
114U_U53:A42_U-0.353-0.030.12-6.078-8.1634.363
117U_U56:A38_U-0.337-0.3640.026-2.105-6.633-13.124
119U_U58:A36_U0.001-0.2530.249-2.399-11.4315.075
122U_U62:G32_U2.164-0.6610.174-4.285-16.322-7.02

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.