A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: 6JR1  PDB ID: 6JR1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.062-0.1970.537-6.099-7.8550.142
14I_DA4:DT289_J0.055-0.134-0.1816.096-9.6741.374
15I_DA5:DT288_J0.6420.2270.1324.893-15.3718.571
17I_DA7:DT286_J0.08-0.1830.3395.585-9.6214.341
111I_DA11:DT282_J0.026-0.145-0.3572.3680.991-1.136
117I_DA17:DT276_J0.14-0.1780.6447.51-8.5353.696
119I_DA19:DT274_J0.063-0.1230.0654.934-16.5732.611
124I_DA24:DT269_J0.188-0.126-0.1020.822-8.2011.978
127I_DA27:DT266_J0.201-0.130.4176.97-12.5682.051
128I_DA28:DT265_J0.187-0.1410.0627.626-15.2214.013
129I_DA29:DT264_J0.091-0.1-0.063.71-15.7930.721
130I_DA30:DT263_J0.043-0.1270.126-0.787-10.9752.566
135I_DA35:DT258_J0.066-0.1470.307-0.563-8.2112.672
141I_DA41:DT252_J-0.013-0.1230.137-0.973-1.6052.638
142I_DA42:DT251_J0.116-0.0630.271-0.838-1.425-1.088
143I_DA43:DT250_J0.186-0.0980.0137.015-1.937-0.18
151I_DA51:DT242_J0.053-0.129-0.233-4.0761.6614.465
154I_DA54:DT239_J0.065-0.208-0.4426.88-0.273.576
155I_DA55:DT238_J0.088-0.184-0.51212.197-11.6311.139
156I_DA56:DT237_J0.159-0.089-0.36715.464-21.5033.563
157I_DA57:DT236_J0.144-0.049-0.16811.864-27.904-0.521
161I_DA61:DT232_J0.038-0.138-0.007-3.861-4.4463.612
167I_DA67:DT226_J0.082-0.1890.2011.541-21.621-3.311
172I_DA72:DT221_J0.084-0.1830.092-1.566-2.4614.583
173I_DA73:DT220_J0.081-0.1510.026-1.151-3.683.309
177I_DA77:DT216_J0.224-0.0780.2132.174-19.073-5.101
182I_DA82:DT211_J0.074-0.1030.1880.07-3.8742.808
183I_DA83:DT210_J0.09-0.145-0.132.296-4.8354.179
185I_DA85:DT208_J0.106-0.1240.1054.13-8.0852.39
195I_DA95:DT198_J0.107-0.0950.106-2.608-3.0192.041
199I_DA99:DT194_J0.203-0.0810.0431.924-24.332-0.45
1102I_DA102:DT191_J0.064-0.2070.34-3.877-6.6984.551
1109I_DA109:DT184_J0.046-0.1490.2026.127-14.3154.481
1110I_DA110:DT183_J0.147-0.1630.1334.252-15.3410.439
1111I_DA111:DT182_J0.085-0.128-0.093-4.526-10.6942.224
1113I_DA113:DT180_J0.107-0.10.138-3.507-2.4871.807
1115I_DA115:DT178_J0.084-0.1430.0534.547-4.8564.594
1124I_DA124:DT169_J0.075-0.0660.0729.822-4.1134.336
1126I_DA126:DT167_J0.082-0.150.1444.222-18.9151.086
1127I_DA127:DT166_J0.089-0.0750.131-2.167-18.928-0.098
1133I_DA133:DT160_J0.073-0.1260.016-0.056-2.4790.098
1139I_DA139:DT154_J0.121-0.1440.2270.393-9.8140.544
1141I_DA141:DT152_J0.2520.2330.2220.928-8.87.337
1145I_DA145:DT148_J0.105-0.095-0.0144.453-1.5150.054
13I_DC3:DG290_J0.163-0.1080.0094.179-3.9082.061
19I_DC9:DG284_J0.131-0.1050.269-7.095-2.3570.092
110I_DC10:DG283_J0.194-0.1540.0150.2185.4740.129
112I_DC12:DG281_J0.185-0.161-0.0583.023-4.413-0.346
113I_DC13:DG280_J0.193-0.139-0.0020.929-6.72.542
116I_DC16:DG277_J0.359-0.179-0.2477.26-16.1062.315
122I_DC22:DG271_J0.165-0.0930.323-9.932-8.0292.394
125I_DC25:DG268_J0.204-0.073-0.3577.676-12.1892.214
126I_DC26:DG267_J0.36-0.17-0.10813.03-19.5583.083
144I_DC44:DG249_J0.252-0.1470.1086.251-4.0623.3
147I_DC47:DG246_J0.142-0.2670.6784.571-25.938-4.662
149I_DC49:DG244_J0.156-0.159-0.391-5.928-3.420.319
150I_DC50:DG243_J0.149-0.093-0.035-3.727-1.3122.718
153I_DC53:DG240_J0.175-0.139-0.1564.7134.8561.017
160I_DC60:DG233_J0.181-0.1750.043-1.093-8.9850.176
166I_DC66:DG227_J0.21-0.1-0.3159.568-4.0062.717
169I_DC69:DG224_J0.221-0.2540.087-1.709-17.43-1.769
176I_DC76:DG217_J0.273-0.136-0.2186.917-10.9643.2
179I_DC79:DG214_J0.28-0.2560.3252.955-21.13-1.766
184I_DC84:DG209_J0.212-0.149-0.3533.065-3.9032.783
188I_DC88:DG205_J0.27-0.2030.3084.819-19.836-2.216
189I_DC89:DG204_J0.089-0.2170.944-10.654-17.212-0.851
1101I_DC101:DG192_J0.177-0.210.421-3.528-14.0090.45
1107I_DC107:DG186_J0.243-0.149-0.5538.293-6.074.191
1108I_DC108:DG185_J0.3-0.144-0.0118.912-19.7152.577
1114I_DC114:DG179_J0.243-0.1230.119-0.188-2.0842.61
1116I_DC116:DG177_J0.265-0.085-0.3588.775-11.0873.15
1129I_DC129:DG164_J0.212-0.1290.42-5.2531.2782.774
1132I_DC132:DG161_J0.168-0.1260.1030.489-3.88-0.268
115I_DG15:DC278_J-0.212-0.1250.1494.398-15.7473.863
118I_DG18:DC275_J-0.137-0.0890.1424.977-11.731.751
131I_DG31:DC262_J-0.231-0.1520.243-3.873-5.2830.566
133I_DG33:DC260_J-0.236-0.143-0.247-2.337-4.9493.35
139I_DG39:DC254_J-0.211-0.0170.081-7.765-7.8950.239
140I_DG40:DC253_J-0.184-0.11-0.126-3.9641.9332.006
146I_DG46:DC247_J-0.083-0.0680.3329.066-14.492-1.819
158I_DG58:DC235_J-0.206-0.1980.1741.493-22.7140.98
159I_DG59:DC234_J-0.228-0.091-0.267-5.233-13.0761.305
163I_DG63:DC230_J-0.252-0.1040.019-1.518-4.4743.034
168I_DG68:DC225_J-0.129-0.0550.171.337-16.3450.851
171I_DG71:DC222_J-0.211-0.1260.324-2.692-2.133.44
178I_DG78:DC215_J-0.13-0.0920.5314.053-8.881-0.121
181I_DG81:DC212_J-0.243-0.1570.101-0.018-1.411-0.057
187I_DG87:DC206_J-0.196-0.0820.0955.272-8.3512.691
194I_DG94:DC199_J-0.232-0.17-0.174-6.047-4.7791.386
197I_DG97:DC196_J-0.178-0.143-0.1434.11-4.9541.172
198I_DG98:DC195_J-0.189-0.078-0.0675.148-8.7443.309
1100I_DG100:DC193_J-0.142-0.0980.1573.128-10.0821.083
1103I_DG103:DC190_J-0.146-0.2620.33-4.177-3.872.157
1121I_DG121:DC172_J-0.213-0.1310.316-3.187-2.3781.866
1122I_DG122:DC171_J-0.219-0.0980.0542.741-4.030.2
1125I_DG125:DC168_J-0.205-0.148-0.03612.495-8.2351.222
1131I_DG131:DC162_J-0.204-0.0860.125-4.455-5.4671.946
1134I_DG134:DC159_J-0.147-0.1760.1687.817-4.6082.476
1135I_DG135:DC158_J-0.204-0.1470.4922.759-6.5172.079
1137I_DG137:DC156_J-0.196-0.1230.2346.038-5.1562.233
1138I_DG138:DC155_J-0.181-0.1240.0745.288-8.2882.156
1144I_DG144:DC149_J-0.184-0.114-0.0071.881-2.808-0.184
12I_DT2:DA291_J-0.198-0.066-0.3394.657-3.236-0.65
16I_DT6:DA287_J0.2660.2630.1377.652-14.1167.039
18I_DT8:DA285_J-0.103-0.1170.2121.893-10.2211.133
114I_DT14:DA279_J-0.5530.0720.13510.302-11.6935.154
120I_DT20:DA273_J-0.033-0.0570.0981.249-16.8383.142
121I_DT21:DA272_J-0.144-0.1460.129-2.471-13.7641.888
123I_DT23:DA270_J-0.05-0.1360.311-6.454-6.1174.859
132I_DT32:DA261_J-0.093-0.1110.122-3.199-2.443-0.209
134I_DT34:DA259_J0.016-0.169-0.1784.239-6.4185.977
136I_DT36:DA257_J-0.08-0.1890.1674.696-14.1282.199
137I_DT37:DA256_J-0.119-0.1750.147-1.748-16.146-1.234
138I_DT38:DA255_J-0.064-0.1390.152-3.977-13.6951.882
145I_DT45:DA248_J-0.064-0.1050.2398.878-11.54-2.186
148I_DT48:DA245_J-0.3670.452-0.114-2.368-17.6250.174
152I_DT52:DA241_J-0.11-0.093-0.1693.3672.3324.622
162I_DT62:DA231_J-0.085-0.1390.193-1.505-2.5162.935
164I_DT64:DA229_J-0.025-0.103-0.0010.112-5.5671.956
165I_DT65:DA228_J-0.079-0.104-0.2584.652-5.2041.625
170I_DT70:DA223_J-0.086-0.1080.431-6.086-15.1542.031
174I_DT74:DA219_J-0.06-0.147-0.0161.57-4.1293.256
175I_DT75:DA218_J0.0-0.118-0.2125.622-4.894.558
180I_DT80:DA213_J-0.027-0.1140.497-0.816-7.8721.606
186I_DT86:DA207_J-0.078-0.160.0974.682-9.2092.018
190I_DT90:DA203_J-0.3780.1850.174-9.743-28.5312.03
191I_DT91:DA202_J-0.177-0.1530.079-11.19-7.9022.882
192I_DT92:DA201_J0.015-0.1580.197-7.4652.0794.499
193I_DT93:DA200_J0.036-0.2290.109-1.0333.8352.212
196I_DT96:DA197_J-0.086-0.104-0.1383.659-3.4675.79
1104I_DT104:DA189_J-0.041-0.1860.3471.322-2.763.277
1105I_DT105:DA188_J-0.081-0.1330.2152.041-7.0961.854
1106I_DT106:DA187_J-0.078-0.056-0.1472.166-8.1673.292
1112I_DT112:DA181_J-0.134-0.093-0.0310.535-7.482-1.867
1117I_DT117:DA176_J-0.079-0.1520.0183.507-14.551-1.489
1118I_DT118:DA175_J-0.097-0.104-0.1081.997-17.959-0.12
1119I_DT119:DA174_J-0.101-0.161-0.016-1.377-19.31-0.267
1120I_DT120:DA173_J-0.117-0.1150.042-5.534-17.707-1.461
1123I_DT123:DA170_J-0.153-0.13-0.0564.126-4.0513.034
1128I_DT128:DA165_J-0.14-0.1320.439-8.951-12.0621.974
1130I_DT130:DA163_J-0.213-0.0560.15-0.816-20.934-5.936
1136I_DT136:DA157_J-0.062-0.1990.1652.622-5.73.126
1140I_DT140:DA153_J-0.112-0.1120.1640.558-6.3931.968
1142I_DT142:DA151_J-0.127-0.0720.0770.651-8.6472.077
1143I_DT143:DA150_J-0.068-0.048-0.0051.949-4.1590.546
1146I_DT146:DA147_J0.03-0.163-0.0856.581-3.8476.952

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.