A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Aug-2022 number of released structures: 12237
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NDB ID: 6JR1  PDB ID: 6JR1 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11II_DA1DT2:DA291DT292_JJ-0.178-0.983.0957.3622.55330.46-2.2541.6112.8844.763-13.73231.418
14II_DA4DA5:DT288DT289_JJ0.247-0.1783.314-0.543.20237.671-0.691-0.4513.2854.9470.83437.806
15II_DA5DT6:DA287DT288_JJ0.182-0.5023.1381.4661.01128.715-1.228-0.0523.1242.035-2.95228.769
17II_DA7DT8:DA285DT286_JJ-0.014-0.783.3950.794-2.92231.512-0.8640.1793.45-5.365-1.45731.654
111II_DA11DC12:DG281DT282_JJ0.019-1.0913.234-5.534.21433.336-2.515-0.8863.0367.2479.51134.034
117II_DA17DG18:DC275DT276_JJ0.052-0.1583.5121.621.28330.592-0.570.2443.52.427-3.06530.66
119II_DA19DT20:DA273DT274_JJ-0.02-0.6413.302-0.437-3.67633.876-0.498-0.0363.351-6.2850.74834.072
124II_DA24DC25:DG268DT269_JJ-0.1430.583.0393.361-0.18536.9150.9350.6433.012-0.291-5.29437.063
127II_DA27DA28:DT265DT266_JJ0.2560.4273.4972.292-0.05633.4970.749-0.043.506-0.097-3.97133.573
128II_DA28DA29:DT264DT265_JJ-0.4970.3853.324-1.8-1.42538.6150.7590.5253.327-2.1532.7238.68
129II_DA29DA30:DT263DT264_JJ0.097-0.2183.384-4.460.53837.844-0.405-0.7323.3490.8266.84738.1
130II_DA30DG31:DC262DT263_JJ-0.346-0.6563.281-3.8543.56835.264-1.590.0073.225.856.31935.641
135II_DA35DT36:DA257DT258_JJ0.132-0.5753.2632.691-3.533.879-0.4210.2043.305-5.974-4.59434.157
141II_DA41DA42:DT251DT252_JJ-0.401-0.0733.245-2.9628.7833.252-1.480.2183.14814.9845.05434.484
142II_DA42DA43:DT250DT251_JJ0.448-0.223.4065.4899.17428.597-2.3310.2933.21317.805-10.65430.49
143II_DA43DC44:DG249DT250_JJ0.543-0.8953.3761.4382.71831.392-2.164-0.7253.315.009-2.64931.538
151II_DA51DT52:DA241DT242_JJ0.289-0.8853.216-1.6865.32527.696-2.999-0.9662.97510.9823.47828.243
154II_DA54DA55:DT238DT239_JJ-0.5960.2243.3223.5585.0933.099-0.4531.6173.248.838-6.17833.661
155II_DA55DA56:DT237DT238_JJ0.1610.3123.3014.4392.22333.3160.170.4563.3083.851-7.68933.674
156II_DA56DA57:DT236DT237_JJ-0.4231.2393.3050.73-2.16141.221.990.6783.231-3.067-1.03741.28
157II_DA57DG58:DC235DT236_JJ0.7921.153.739-1.334-5.1838.4152.44-1.3753.532-7.8262.01638.772
161II_DA61DT62:DA231DT232_JJ0.022-0.6683.281-1.2632.45529.991-1.785-0.2983.2134.7312.43430.115
167II_DA67DG68:DC225DT226_JJ0.9990.6333.3542.6-0.85533.3941.243-1.2913.403-1.485-4.51533.503
172II_DA72DA73:DT220DT221_JJ0.002-0.2813.288-1.2235.82532.179-1.503-0.2143.18710.3972.18432.71
173II_DA73DT74:DA219DT220_JJ0.049-1.0733.2881.2495.24927.976-3.3530.183.0410.731-2.55428.481
177II_DA77DG78:DC215DT216_JJ0.9720.4233.216-0.808-4.2733.7271.387-1.7883.118-7.3221.38533.998
182II_DA82DA83:DT210DT211_JJ0.207-0.0513.3391.6837.45932.641-1.343-0.0773.25513.049-2.94533.501
183II_DA83DC84:DG209DT210_JJ0.045-0.4743.371.5956.63630.079-2.2050.2313.19312.583-3.02430.826
185II_DA85DT86:DA207DT208_JJ0.225-0.5563.3311.5831.93729.742-1.488-0.1033.2963.766-3.07729.845
195II_DA95DT96:DA197DT198_JJ-0.21-0.3743.2521.7195.07226.977-2.0110.8573.11110.738-3.63827.494
199II_DA99DG100:DC193DT194_JJ1.1050.3253.332-0.41-5.83434.4791.429-1.9013.222-9.7550.68534.957
1102II_DA102DG103:DC190DT191_JJ-1.07-0.3963.25-4.4844.72132.959-1.4641.1133.2778.227.80833.578
1109II_DA109DA110:DT183DT184_JJ0.2980.0263.378-0.1610.69333.131-0.075-0.5513.3761.2150.28333.138
1110II_DA110DA111:DT182DT183_JJ0.072-0.1733.519-2.415-3.61938.0360.226-0.4363.509-5.5313.6938.275
1111II_DA111DT112:DA181DT182_JJ-0.53-0.7593.162-1.547-0.14431.513-1.3690.6953.187-0.2662.84631.55
1113II_DA113DC114:DG179DT180_JJ-0.221-0.5823.350.5065.81727.17-2.620.5833.15512.203-1.06127.779
1115II_DA115DC116:DG177DT178_JJ0.352-0.5313.2113.7081.59631.361-1.2650.033.22.937-6.82431.613
1124II_DA124DG125:DC168DT169_JJ-0.327-0.0653.248-0.8395.60331.918-1.0970.4383.19710.091.5132.404
1126II_DA126DA127:DT166DT167_JJ0.011-0.1053.3250.167-2.27139.0310.1210.0043.326-3.396-0.24939.095
1127II_DA127DT128:DA165DT166_JJ0.129-0.5383.424-0.56-3.64433.383-0.3-0.3213.459-6.320.97233.58
1133II_DA133DG134:DC159DT160_JJ0.7510.2693.27-1.71510.97126.749-1.921-1.8883.08522.5213.52128.924
1139II_DA139DT140:DA153DT154_JJ0.345-0.7763.3460.291-1.97430.126-1.077-0.6023.391-3.792-0.55930.19
1141II_DA141DT142:DA151DT152_JJ-0.624-0.7573.298-0.872-0.53330.497-1.3321.013.326-1.0131.65730.514
1145II_DA145DT146:DA147DT148_JJ0.923-0.6933.457-0.4784.24531.681-2.059-1.7673.3247.7320.87131.96
13II_DC3DA4:DT289DG290_JJ-0.4850.5133.2580.2145.6734.575-0.0070.8383.2959.46-0.35835.024
19II_DC9DC10:DG283DG284_JJ-0.07-0.6633.1231.8994.8631.882-2.0010.4432.9828.775-3.42932.295
110II_DC10DA11:DT282DG283_JJ-0.538-0.4443.327-3.4243.80629.671-1.6480.3243.2857.3636.62430.099
112II_DC12DC13:DG280DG281_JJ0.189-0.583.2464.9287.89432.974-2.2020.4393.02713.573-8.47434.227
113II_DC13DT14:DA279DG280_JJ-0.3090.4553.2244.0127.52525.85-0.9211.6633.14616.266-8.67227.198
116II_DC16DA17:DT276DG277_JJ0.6882.8933.262-2.761-8.47247.5694.137-1.0372.698-10.3963.38848.349
122II_DC22DT23:DA270DG271_JJ-0.041-0.1273.1842.686.68129.805-1.5180.5913.06912.755-5.11630.643
125II_DC25DC26:DG267DG268_JJ0.6030.7953.2794.7542.26435.1070.965-0.2773.3723.727-7.82735.488
126II_DC26DA27:DT266DG267_JJ0.3672.6253.509-0.496-11.20647.2184.052-0.4852.849-13.7640.60948.458
144II_DC44DT45:DA248DG249_JJ-0.277-0.6193.1521.3043.21330.184-1.7940.7783.0576.144-2.49430.378
147II_DC47DT48:DA245DG246_JJ0.2520.033.1558.0495.14730.529-0.8570.9663.0849.486-14.83731.955
149II_DC49DC50:DG243DG244_JJ-0.1590.1833.339-5.0423.831.957-0.355-0.623.3246.8199.04832.558
150II_DC50DA51:DT242DG243_JJ-0.459-0.2143.29-3.0563.54529.881-1.1340.2553.2736.8235.88130.237
153II_DC53DA54:DT239DG240_JJ-0.308-0.6863.082.41511.62228.029-3.4061.0232.56422.748-4.72630.392
160II_DC60DA61:DT232DG233_JJ-0.2910.3333.453-3.8225.19635.162-0.259-0.1153.4778.5136.26135.731
166II_DC66DA67:DT226DG227_JJ-0.8111.393.711-1.251-5.76841.042.6470.9973.515-8.1761.77341.444
169II_DC69DT70:DA223DG224_JJ0.3521.0683.489-0.423-2.26737.5711.966-0.6043.417-3.5150.65637.639
176II_DC76DA77:DT216DG217_JJ-0.5411.8753.552-1.770.63742.0282.540.5543.5980.8882.46742.068
179II_DC79DT80:DA213DG214_JJ1.1341.2163.4941.771-6.65539.8422.542-1.4343.303-9.677-2.57540.409
184II_DC84DA85:DT208DG209_JJ-0.3930.7073.387-1.2315.53937.1250.3370.4423.4648.6381.9237.541
188II_DC88DC89:DG204DG205_JJ0.3111.293.915-2.158-6.83243.2062.491-0.6573.661-9.2022.90743.768
189II_DC89DT90:DA203DG204_JJ-0.8190.5963.231.688-6.1434.6351.871.5973.041-10.207-2.80735.198
1101II_DC101DA102:DT191DG192_JJ0.4960.1153.293-2.1755.05537.257-0.482-1.0523.2477.863.38237.647
1107II_DC107DC108:DG185DG186_JJ-0.6931.4383.4910.137-1.51834.1462.71.2023.423-2.584-0.23334.179
1108II_DC108DA109:DT184DG185_JJ0.672.723.3663.42-7.78847.1853.95-0.5612.947-9.637-4.23247.903
1114II_DC114DA115:DT178DG179_JJ-0.270.4983.2280.3656.85936.164-0.1460.4783.26210.928-0.58136.789
1116II_DC116DT117:DA176DG177_JJ-0.234-0.4563.5441.556-1.67236.844-0.4740.5983.548-2.642-2.45836.912
1129II_DC129DT130:DA163DG164_JJ-1.6320.8853.293-0.787-17.99339.5542.8872.1382.694-25.0731.09743.312
1132II_DC132DA133:DT160DG161_JJ-0.2950.7233.34-2.1936.8837.8420.2050.1643.42610.4913.34438.5
115II_DG15DC16:DG277DC278_JJ-0.161.5143.284.57-1.60933.6742.8420.9963.158-2.759-7.83834.01
118II_DG18DA19:DT274DC275_JJ0.085-0.1873.1841.133-2.14440.653-0.0380.03.191-3.082-1.62940.722
131II_DG31DT32:DA261DC262_JJ-0.059-0.7613.2851.6594.99931.046-2.3230.4143.129.256-3.07231.479
133II_DG33DT34:DA259DC260_JJ0.281-0.2923.1770.752.230.956-0.956-0.3853.1554.115-1.40231.041
139II_DG39DG40:DC253DC254_JJ0.3630.8093.371-0.9054.18829.910.664-0.8883.4378.0631.74330.209
140II_DG40DA41:DT252DC253_JJ-0.2171.2153.287-5.1836.22140.4181.03-0.2723.438.8967.41141.188
146II_DG46DC47:DG246DC247_JJ0.070.7593.9067.792-11.94642.522.2730.743.539-15.944-10.444.743
158II_DG58DG59:DC234DC235_JJ0.3941.3323.6230.784-5.92241.2932.546-0.4643.415-8.345-1.10441.704
159II_DG59DC60:DG233DC234_JJ0.0190.1883.216-1.955-2.31738.3350.568-0.2673.195-3.5222.97238.45
163II_DG63DT64:DA229DC230_JJ-0.367-0.4233.4090.3794.69331.117-1.6850.7493.3078.686-0.70131.462
168II_DG68DC69:DG224DC225_JJ-0.7411.3373.4670.215-7.60543.5622.5071.0063.198-10.155-0.28744.19
171II_DG71DA72:DT221DC222_JJ-0.505-0.0693.365-1.176.32632.566-1.2140.6823.30911.1452.06133.178
178II_DG78DC79:DG214DC215_JJ-0.8071.2023.5491.167-10.09841.8842.6781.223.168-13.881-1.60443.046
181II_DG81DA82:DT211DC212_JJ-0.4250.1523.301-2.0368.93932.586-1.2130.3953.24815.553.54133.817
187II_DG87DC88:DG205DC206_JJ-0.6130.3873.4910.614-5.46437.7491.3241.023.394-8.39-0.94338.133
194II_DG94DA95:DT198DC199_JJ-0.58-0.2573.209-1.5712.99335.557-0.8430.7223.24.8872.56635.712
197II_DG97DG98:DC195DC196_JJ0.7770.3533.2544.132-1.11832.9370.806-0.6623.311-1.962-7.24933.206
198II_DG98DA99:DT194DC195_JJ-1.0681.0543.489-0.718-3.0544.2231.6971.3453.429-4.0450.95244.329
1100II_DG100DC101:DG192DC193_JJ-0.3930.5063.45-3.354-1.4639.3360.930.1643.451-2.1644.9739.499
1103II_DG103DT104:DA189DC190_JJ-0.12-1.1383.178-0.7131.90930.857-2.4910.0933.1063.5831.33830.923
1121II_DG121DG122:DC171DC172_JJ-0.5020.2913.289-1.3265.33834.303-0.3420.6363.3128.9792.2334.728
1122II_DG122DT123:DA170DC171_JJ0.6160.1073.2690.8815.75434.352-0.7-0.8953.2589.657-1.47934.828
1125II_DG125DA126:DT167DC168_JJ-0.102-0.1693.332-0.021-0.12641.866-0.2230.143.333-0.1770.02941.866
1131II_DG131DC132:DG161DC162_JJ-0.7460.1813.186-2.3065.06531.696-0.5670.9393.229.1854.18132.169
1134II_DG134DG135:DC158DC159_JJ-0.059-0.73.191-5.1895.48835.463-1.867-0.6053.0318.8868.436.234
1135II_DG135DT136:DA157DC158_JJ-0.184-1.0513.3156.3151.21133.151-2.0081.3443.1872.098-10.9433.752
1137II_DG137DG138:DC155DC156_JJ0.364-0.0743.3271.7561.51335.324-0.348-0.3353.3342.49-2.8935.397
1138II_DG138DA139:DT154DC155_JJ-0.282-0.2043.3090.116-1.3341.098-0.1450.4143.313-1.893-0.16541.118
1144II_DG144DA145:DT148DC149_JJ-0.374-0.33.184-0.7478.20636.188-1.5330.4923.05313.0041.18437.084
12II_DT2DC3:DG290DA291_JJ0.7450.2583.3743.0382.51337.7970.063-0.7413.4313.866-4.67437.995
16II_DT6DA7:DT286DA287_JJ0.1460.1793.473-1.678-5.88437.8861.05-0.4443.399-8.9912.56438.359
18II_DT8DC9:DG284DA285_JJ0.25-0.513.344-0.8210.31740.707-0.768-0.4533.3340.4561.1840.716
114II_DT14DG15:DC278DA279_JJ0.1492.3223.5067.349-0.49246.6942.940.4563.467-0.616-9.20447.239
120II_DT20DT21:DA272DA273_JJ0.041-0.2483.3030.615-2.68636.636-0.0220.023.312-4.266-0.97736.736
121II_DT21DC22:DG271DA272_JJ0.256-0.2933.267-0.3031.341.084-0.558-0.3983.2551.8520.43241.105
123II_DT23DA24:DT269DA270_JJ0.3661.3473.2824.7037.01836.1381.1320.0863.49211.127-7.45637.081
132II_DT32DG33:DC260DA261_JJ0.9020.3873.3115.2798.32235.334-0.579-0.6773.40813.391-8.49636.64
134II_DT34DA35:DT258DA259_JJ0.152-0.3153.3610.4420.04540.366-0.461-0.173.3620.066-0.64140.368
136II_DT36DT37:DA256DA257_JJ-0.172-0.353.4393.102-4.85736.0910.150.7273.429-7.778-4.96736.533
137II_DT37DT38:DA255DA256_JJ0.026-0.3063.3862.66-2.10234.195-0.1770.3883.391-3.564-4.5134.358
138II_DT38DG39:DC254DA255_JJ-0.0931.4353.497-2.527-3.01441.0292.381-0.1563.387-4.2883.59541.208
145II_DT45DG46:DC247DA248_JJ0.7580.5353.3976.343-0.736.0670.954-0.2863.466-1.12-10.14736.609
148II_DT48DC49:DG244DA245_JJ0.6690.763.413-1.361.57144.3430.854-1.0183.4162.081.80144.389
152II_DT52DC53:DG240DA241_JJ-0.157-0.633.287-2.4569.53132.597-2.572-0.1172.99316.5174.25534.012
162II_DT62DG63:DC230DA231_JJ0.4040.3023.3542.1337.71436.834-0.571-0.3383.36512.034-3.32837.664
164II_DT64DT65:DA228DA229_JJ0.105-0.1153.1583.1575.52831.823-1.1430.3473.0919.957-5.68632.437
165II_DT65DC66:DG227DA228_JJ0.9880.3843.2745.3533.19235.5820.156-0.8153.4025.174-8.67836.106
170II_DT70DG71:DC222DA223_JJ0.7381.2753.2470.4593.96937.7721.446-1.0753.3676.109-0.70637.975
174II_DT74DT75:DA218DA219_JJ0.121-0.2353.2053.576.83431.212-1.620.4053.0812.464-6.51132.128
175II_DT75DC76:DG217DA218_JJ0.140.2963.3286.0095.23532.78-0.3660.7643.3089.109-10.45533.709
180II_DT80DG81:DC212DA213_JJ-0.4630.6943.3160.0676.00637.480.2770.7213.3829.274-0.10337.942
186II_DT86DG87:DC206DA207_JJ1.1240.5243.4174.9461.21234.9680.672-1.073.5542.003-8.17835.325
190II_DT90DT91:DA202DA203_JJ0.3560.6933.476-3.7641.10136.8760.933-1.0953.4431.7355.92937.077
191II_DT91DT92:DA201DA202_JJ0.2680.3853.529-2.7349.94830.987-1.209-0.9973.44918.0054.94832.619
192II_DT92DT93:DA200DA201_JJ0.3990.0153.2291.67110.74730.813-1.827-0.4223.07919.481-3.02832.633
193II_DT93DG94:DC199DA200_JJ0.444-0.7913.1954.0413.92230.85-3.439-0.1532.64124.544-7.12234.011
196II_DT96DG97:DC196DA197_JJ0.4940.5323.3743.5396.33532.266-0.197-0.2373.44711.222-6.26933.05
1104II_DT104DT105:DA188DA189_JJ-0.167-0.163.2733.2094.4333.278-0.9930.8083.1967.671-5.55733.712
1105II_DT105DT106:DA187DA188_JJ0.3790.1263.2266.3464.51134.95-0.4440.2963.2357.398-10.40735.781
1106II_DT106DC107:DG186DA187_JJ1.0021.0883.2310.8033.64837.7841.162-0.1493.4645.483-16.23639.407
1112II_DT112DA113:DT180DA181_JJ-0.099-0.723.268-2.9835.79635.557-1.967-0.2553.1149.3934.83436.131
1117II_DT117DT118:DA175DA176_JJ0.2460.0793.2574.132-4.48139.2760.6370.1183.237-6.617-6.10239.727
1118II_DT118DT119:DA174DA175_JJ0.3310.0563.4662.578-5.537.6730.824-0.1613.439-8.449-3.96138.142
1119II_DT119DT120:DA173DA174_JJ-0.0490.1423.5181.098-5.17435.3881.030.2493.461-8.454-1.79435.769
1120II_DT120DG121:DC172DA173_JJ0.7141.8883.372-0.757-3.03440.6733.046-1.1083.215-4.3571.08640.788
1123II_DT123DA124:DT169DA170_JJ-0.1621.0613.3250.0629.97834.0610.1850.2753.48816.597-0.10335.451
1128II_DT128DC129:DG164DA165_JJ0.560.4783.4060.9913.42536.2970.265-0.753.4495.481-1.58636.465
1130II_DT130DG131:DC162DA163_JJ1.0431.4153.4660.928-3.47842.9162.287-1.3253.367-4.743-1.26643.059
1136II_DT136DG137:DC156DA157_JJ0.1940.2073.334.0451.81934.520.0620.3063.3373.049-6.78234.795
1140II_DT140DA141:DT152DA153_JJ0.422-0.1663.241.0972.14336.169-0.565-0.5263.2363.447-1.76436.247
1142II_DT142DT143:DA150DA151_JJ0.103-0.4643.2291.2742.82533.938-1.2320.0233.1824.827-2.17634.075
1143II_DT143DG144:DC149DA150_JJ0.1770.1873.274-0.1325.40634.815-0.499-0.3123.2658.9680.21935.219

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.