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NDB ID: 6JRG  PDB ID: 6JRG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA2:DT32_D0.627-0.1270.034-3.28-17.0814.591
13C_DA3:DT31_D0.289-0.2820.0850.04-6.5450.436
18C_DA8:DT26_D-0.177-0.1910.22411.046-18.1963.084
110C_DA11:DT23_C0.453-0.4830.2845.063-18.056-0.458
112C_DA13:DT21_C-0.192-0.1520.114-3.121-7.5520.811
119C_DA30:DT4_D0.291-0.191-0.071-0.502-15.4135.189
121C_DA32:DT2_D-0.01-0.16-0.1574.252-12.902-2.184
11C_DC1:DG33_D-0.40.1620.243-8.814-8.47513.669
15C_DC5:DG29_D-0.447-0.4540.099-6.036-4.3162.415
113C_DC14:DG20_C-0.284-0.129-0.35713.817-18.277-1.366
114C_DC15:DG19_C0.2410.620.528-11.095-9.2818.196
115C_DC26:DG8_D0.439-0.1840.154-11.754-16.1484.073
118C_DC29:DG5_D-0.05-0.2410.0974.473-3.1411.575
16C_DG6:DC28_D0.9610.0760.2559.198-4.5558.637
19C_DG10:DC24_C-0.081-0.104-0.2-0.893-13.817-3.133
111C_DG12:DC22_C-0.075-0.4320.368-5.573-11.8770.68
117C_DG28:DC6_D-0.298-0.116-0.077-10.401-9.3976.546
120C_DG31:DC3_D0.69-0.0220.001-3.643-6.86912.06
14C_DT4:DA30_D-0.663-0.2930.0764.289-12.2935.88
17C_DT7:DA27_D-0.089-0.2960.05718.936-12.4110.415
116C_DT27:DA7_D-0.519-0.1740.379-16.069-15.5164.247
122C_DT33:DA1_D0.665-0.339-0.79316.977-14.566-0.708
125D_DC12:DG22_D0.132-0.3740.228-2.123-20.2325.209
123D_DG10:DC24_D-0.026-0.1050.0292.625-11.574-2.473
127D_DG14:DC20_D0.914-0.4040.2537.586-13.3890.46
128D_DG15:DC19_D1.5251.1230.405-17.786-16.19337.525
124D_DT11:DA23_D-0.1640.0540.4158.41-14.158.269
126D_DT13:DA21_D-0.7680.1660.138-1.232-11.73210.648

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.