A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6JXD  PDB ID: 6JXD 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12I_DA-70:DT70_J-0.027-0.024-0.377-8.12-7.5311.665
14I_DA-68:DT68_J0.251-0.422-0.299-4.817-10.744-0.913
16I_DA-66:DT66_J0.097-0.197-0.433-0.12-12.871-1.786
118I_DA-54:DT54_J0.209-0.4590.55912.688-6.529-0.877
127I_DA-45:DT45_J-0.634-0.042-0.245-12.416-11.833-1.821
128I_DA-44:DT44_J-0.177-0.037-0.414-9.542-19.5961.645
137I_DA-35:DT35_J-0.255-0.1990.266-20.536-23.84-5.674
139I_DA-33:DT33_J-0.197-0.3030.145-2.496-8.507-7.323
141I_DA-31:DT31_J-0.247-0.231-0.506-12.787-7.801-2.85
147I_DA-25:DT25_J-0.2140.002-0.383-10.7414.9631.845
150I_DA-22:DT22_J0.212-0.205-0.931-10.288-5.869-5.167
157I_DA-15:DT15_J0.16-0.0690.41416.301-11.717-1.202
158I_DA-14:DT14_J0.121-0.1830.10115.409-13.917-3.241
159I_DA-13:DT13_J-0.046-0.1230.31515.137-13.4051.09
163I_DA-9:DT9_J0.758-0.309-0.4814.086-8.685-5.438
167I_DA-5:DT5_J-0.301-0.2180.0771.059-14.271-6.308
178I_DA6:DT-6_J0.177-0.161-0.086-5.676-34.21-6.09
188I_DA16:DT-16_J0.048-0.082-0.296-6.7141.899-0.188
189I_DA17:DT-17_J-0.067-0.1030.71612.575-10.517-3.166
195I_DA23:DT-23_J-0.318-0.2770.411-0.761-4.936-0.628
198I_DA26:DT-26_J0.044-0.1170.0245.066-34.1641.237
1100I_DA28:DT-28_J-0.093-0.09-0.28.476-20.5171.508
1101I_DA29:DT-29_J0.658-0.093-0.3742.838-12.982-1.123
1108I_DA36:DT-36_J-0.101-0.075-0.202-18.531-19.121-9.68
1111I_DA39:DT-39_J0.329-0.013-0.56.586-15.3295.315
1118I_DA46:DT-46_J0.33-0.3870.5285.634-2.485-7.021
1122I_DA50:DT-50_J-0.085-0.2050.3690.152-13.059-2.92
1129I_DA57:DT-57_J0.138-0.263-0.368-8.247-14.359-6.246
1131I_DA59:DT-59_J-0.037-0.0530.6537.061-12.9852.467
1137I_DA65:DT-65_J0.1160.046-0.297-10.706-12.4095.396
1139I_DA67:DT-67_J0.232-0.2250.129-7.171-3.0922.315
1141I_DA69:DT-69_J0.103-0.185-0.00211.093-8.7410.724
11I_DC-71:DG71_J-0.105-0.253-0.0753.044-7.691-3.501
18I_DC-64:DG64_J-0.380.0140.1432.541-6.170.324
19I_DC-63:DG63_J0.512-0.091-0.4713.827-11.269-2.077
110I_DC-62:DG62_J0.362-0.1410.077-3.007-7.5835.693
115I_DC-57:DG57_J-0.181-0.0610.3672.263-10.263-0.011
116I_DC-56:DG56_J-0.108-0.2370.698-4.5891.578-4.498
121I_DC-51:DG51_J0.057-0.411-0.148-1.7524.067-3.265
122I_DC-50:DG50_J0.559-0.1580.067-14.082-4.4672.672
124I_DC-48:DG48_J0.061-0.1610.447-5.826-6.539-3.497
126I_DC-46:DG46_J-0.003-0.1480.182-6.42-21.7882.141
134I_DC-38:DG38_J-0.0450.00.243-16.4174.3931.651
140I_DC-32:DG32_J0.047-0.1880.288-5.156-9.172-2.567
143I_DC-29:DG29_J-0.4310.0650.573-21.674.6390.563
145I_DC-27:DG27_J0.692-0.1490.081-10.016-6.744.929
149I_DC-23:DG23_J0.1430.086-0.0741.107-6.8850.721
151I_DC-21:DG21_J-0.026-0.27-0.2626.997-9.448-0.333
152I_DC-20:DG20_J0.131-0.140.238-11.21-1.773-3.336
154I_DC-18:DG18_J0.02-0.1510.022-7.666-15.3451.169
160I_DC-12:DG12_J0.179-0.273-0.290.339-11.127-2.074
162I_DC-10:DG10_J0.106-0.1210.088-10.287-0.3110.208
164I_DC-8:DG8_J-0.114-0.180.222-2.121-2.2111.317
168I_DC-4:DG4_J0.051-0.0880.35315.328-12.5331.91
170I_DC-2:DG2_J0.47-0.199-0.07212.157-14.3743.589
172I_DC0:DG0_J-0.043-0.463-0.4484.8911.12-6.691
176I_DC4:DG-4_J-0.273-0.197-0.0510.919-12.157-4.749
179I_DC7:DG-7_J0.283-0.203-0.294-2.49-11.401-2.577
180I_DC8:DG-8_J-0.595-0.2530.496-1.426-2.025-3.998
182I_DC10:DG-10_J-0.157-0.308-0.0363.004-1.743-2.515
190I_DC18:DG-18_J0.19-0.2250.084.793-3.188-6.51
191I_DC19:DG-19_J-0.179-0.170.288-5.165-5.255-1.183
193I_DC21:DG-21_J0.553-0.284-0.1549.078-6.5620.318
194I_DC22:DG-22_J0.007-0.209-0.026-6.59-13.2011.8
196I_DC24:DG-24_J0.467-0.050.162-1.886-5.0611.016
1103I_DC31:DG-31_J0.087-0.1910.1385.774-15.8591.817
1105I_DC33:DG-33_J0.043-0.160.916-11.33-1.5291.332
1109I_DC37:DG-37_J-0.214-0.2080.783-23.942-7.577-7.856
1114I_DC42:DG-42_J-0.166-0.1690.269-6.231-0.050.499
1116I_DC44:DG-44_J-0.568-0.0171.006-12.461-14.7841.4
1117I_DC45:DG-45_J-0.2610.0161.062-14.634-11.034-1.375
1121I_DC49:DG-49_J0.283-0.2360.846-16.446-12.090.938
1123I_DC51:DG-51_J0.134-0.115-0.031-4.599-6.5550.789
1132I_DC60:DG-60_J0.014-0.1330.4151.497-8.952-4.094
1133I_DC61:DG-61_J-0.0830.049-0.1812.92-16.9372.684
1136I_DC64:DG-64_J0.284-0.391-0.1236.033-16.4282.597
111I_DG-61:DC61_J-0.287-0.0580.46619.4122.7151.036
112I_DG-60:DC60_J-0.156-0.19-0.0289.565-4.944-0.658
114I_DG-58:DC58_J-0.373-0.344-0.716-9.837-9.8910.44
117I_DG-55:DC55_J-0.013-0.1430.451-5.842-21.4771.83
119I_DG-53:DC53_J0.4070.122-0.04622.328-10.132-4.424
120I_DG-52:DC52_J0.342-0.074-0.2774.526-0.6263.495
123I_DG-49:DC49_J-0.566-0.2210.1445.492-8.903-2.342
131I_DG-41:DC41_J-0.244-0.348-1.16-5.364-12.8981.113
132I_DG-40:DC40_J-0.17-0.028-1.31-23.263-5.854-0.064
135I_DG-37:DC37_J-0.235-0.119-0.334-13.6372.805-8.376
138I_DG-34:DC34_J-0.486-0.135-1.068-27.517-13.886-2.279
142I_DG-30:DC30_J-0.283-0.3630.326-5.424-5.856-4.5
148I_DG-24:DC24_J-0.409-0.185-0.268-9.853-5.665-1.586
153I_DG-19:DC19_J0.0210.011-0.26-10.653-23.6994.512
161I_DG-11:DC11_J-0.012-0.23-0.1652.103-5.5732.112
165I_DG-7:DC7_J-0.34-0.050.02314.03-12.197.542
169I_DG-3:DC3_J-0.1150.0350.7213.394-4.4411.09
171I_DG-1:DC1_J-0.1-0.1420.47518.3-2.136-0.902
174I_DG2:DC-2_J-0.3520.013-0.241-8.766-14.236-1.18
181I_DG9:DC-9_J0.399-0.1050.18511.323-11.1741.776
183I_DG11:DC-11_J-0.03-0.4250.067-0.0480.878-0.881
192I_DG20:DC-20_J-0.148-0.189-0.2837.543-5.722-2.795
199I_DG27:DC-27_J-0.327-0.123-0.1375.57312.4112.087
1102I_DG30:DC-30_J0.093-0.0910.1176.8584.885-3.206
1104I_DG32:DC-32_J-0.523-0.30.066-5.124-7.021-2.518
1112I_DG40:DC-40_J-0.403-0.352-1.053-8.055-11.452.571
1119I_DG47:DC-47_J-0.554-0.4721.0348.978-7.315-4.369
1120I_DG48:DC-48_J-0.253-0.374-0.171-3.598-10.687-6.561
1124I_DG52:DC-52_J-0.021-0.4230.0842.187-8.526-2.474
1126I_DG54:DC-54_J-0.2040.159-0.2244.511-1.8972.688
1128I_DG56:DC-56_J-0.232-0.2250.7233.103-7.742-2.053
1130I_DG58:DC-58_J-0.117-0.1260.4774.137-4.5852.679
1134I_DG62:DC-62_J-0.391-0.182-0.195-1.27-8.6751.82
1135I_DG63:DC-63_J-0.213-0.271-0.454.355-16.3790.879
1143I_DG71:DC-71_J0.074-0.1790.5122.041-11.277-4.977
13I_DT-69:DA69_J-0.006-0.131-0.3314.17-12.6090.052
15I_DT-67:DA67_J-0.011-0.193-0.0524.937-5.383-3.658
17I_DT-65:DA65_J0.149-0.223-0.41915.334-10.633-5.934
113I_DT-59:DA59_J0.122-0.207-0.081-8.655-18.187-0.434
125I_DT-47:DA47_J0.197-0.4061.125-8.885-9.161-0.92
129I_DT-43:DA43_J-0.4180.004-0.8591.251-18.367-12.458
130I_DT-42:DA42_J-0.592-0.193-1.0166.325-5.523-2.539
133I_DT-39:DA39_J-0.346-0.1560.201-18.95-9.2513.608
136I_DT-36:DA36_J-0.287-0.0830.696-20.934-12.671-5.012
144I_DT-28:DA28_J0.062-0.060.768-21.666-14.182.827
146I_DT-26:DA26_J-0.569-0.156-0.165-3.727-39.535-4.84
155I_DT-17:DA17_J0.2-0.079-0.0066.921-18.092-7.541
156I_DT-16:DA16_J0.081-0.1-0.3344.462-2.407-3.418
166I_DT-6:DA6_J0.16-0.296-0.14320.397-33.936-4.81
173I_DT1:DA-1_J-0.128-0.315-0.157-10.127-14.827-3.83
175I_DT3:DA-3_J-0.039-0.1020.681-5.409-6.778-2.43
177I_DT5:DA-5_J0.168-0.2340.37510.104-8.954-8.734
184I_DT12:DA-12_J-0.565-0.272-0.3750.785-7.2811.079
185I_DT13:DA-13_J0.037-0.168-0.055-1.539-11.793-0.084
186I_DT14:DA-14_J0.069-0.0720.198-10.287-16.4950.463
187I_DT15:DA-15_J0.2940.0330.179-16.281-14.048-3.735
197I_DT25:DA-25_J0.278-0.2110.1732.481-0.313-3.744
1106I_DT34:DA-34_J0.131-0.1571.017-15.985-0.4073.112
1107I_DT35:DA-35_J-0.208-0.1610.609-8.1-8.912-1.125
1110I_DT38:DA-38_J-0.594-0.049-0.016-1.967-5.629-2.994
1113I_DT41:DA-41_J0.089-0.332-0.643-0.506-8.791-2.018
1115I_DT43:DA-43_J-0.54-0.1870.444-14.712-16.805-1.923
1125I_DT53:DA-53_J-0.515-0.1630.059-11.211-13.1311.303
1127I_DT55:DA-55_J-0.195-0.184-0.19911.429-18.573-1.352
1138I_DT66:DA-66_J0.08-0.158-0.067-0.221-14.9512.495
1140I_DT68:DA-68_J-0.118-0.3310.4694.681.543.889
1142I_DT70:DA-70_J0.094-0.067-0.20715.554-8.8061.614

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.