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As of 14-Oct-2020 number of released structures: 11024
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NDB ID: 6JXD  PDB ID: 6JXD 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12II_DA-70DT-69:DA69DT70_JJ-0.227-0.2582.962-1.223-2.49831.823-0.0580.2112.98-4.5452.22631.941
14II_DA-68DT-67:DA67DT68_JJ-0.242-0.2053.019-0.7377.64431.845-1.5730.3132.89813.6841.31932.735
16II_DA-66DT-65:DA65DT66_JJ-0.349-0.7482.967-0.339-3.86928.352-0.7040.6353.044-7.8520.68828.611
118II_DA-54DG-53:DC53DT54_JJ0.179-0.0423.1093.9586.52428.84-1.380.4393.02412.817-7.77629.811
127II_DA-45DA-44:DT44DT45_JJ-0.2150.63.333-6.290.75835.6970.855-0.5623.3341.22410.16236.237
128II_DA-44DT-43:DA43DT44_JJ-0.498-0.3322.903-3.77-0.6841.113-0.4050.3432.941-0.9655.35441.283
137II_DA-35DG-34:DC34DT35_JJ0.7340.7113.8573.722.1831.7960.817-0.5273.9543.957-6.75232.079
139II_DA-33DC-32:DG32DT33_JJ0.776-0.3283.201-1.8946.47334.702-1.463-1.5493.04710.7273.13835.331
141II_DA-31DG-30:DC30DT31_JJ-0.1090.0232.987-8.793-0.51336.0740.099-0.9082.932-0.81413.94537.099
147II_DA-25DG-24:DC24DT25_JJ-0.7770.3483.3-4.1155.74934.177-0.3190.6533.3819.6546.9134.88
150II_DA-22DC-21:DG21DT22_JJ-0.4230.7762.629-9.3296.55936.3190.489-0.3512.74610.21714.53138.01
157II_DA-15DA-14:DT14DT15_JJ0.3230.0333.4013.167-7.38936.1651.089-0.0653.345-11.725-5.02637.019
158II_DA-14DA-13:DT13DT14_JJ0.355-0.2563.248-0.671-4.32440.2830.112-0.5883.251-6.2560.97140.51
159II_DA-13DC-12:DG12DT13_JJ-0.035-0.9213.6113.1942.27235.962-1.8340.5493.5323.666-5.15436.168
163II_DA-9DC-8:DG8DT9_JJ0.187-0.5333.314-7.18710.85534.028-2.347-1.2882.91817.76211.76136.364
167II_DA-5DC-4:DG4DT5_JJ0.5420.493.198-1.616-9.15935.4391.986-1.0752.958-14.7352.59936.602
178II_DA6DC7:DG-7DT-6_JJ0.6231.1033.14-2.379-3.07439.5861.958-1.1763.009-4.5263.50339.768
188II_DA16DA17:DT-17DT-16_JJ-1.310.4752.932-10.413-15.88136.3262.30.8152.764-23.59615.47240.841
189II_DA17DC18:DG-18DT-17_JJ-0.156-0.7443.5872.2625.08329.599-2.550.7983.3949.839-4.37930.106
195II_DA23DC24:DG-24DT-23_JJ-0.021-0.8833.3712.2943.7936.036-1.9560.363.2576.098-3.69136.298
198II_DA26DG27:DC-27DT-26_JJ1.4031.1943.54-2.434-12.72738.4893.168-2.3012.927-18.6733.57140.533
1100II_DA28DA29:DT-29DT-28_JJ0.1960.1753.4260.123-1.38336.1130.487-0.2983.417-2.231-0.19836.138
1101II_DA29DG30:DC-30DT-29_JJ0.365-0.893.201-5.6293.04329.5-2.301-1.7962.9775.88910.89230.17
1108II_DA36DC37:DG-37DT-36_JJ-0.3180.2353.5-11.232-7.23534.7691.412-1.1213.33-11.59217.99537.173
1111II_DA39DG40:DC-40DT-39_JJ-0.0740.1793.594-2.96312.30133.631-1.671-0.3533.44220.3864.9135.868
1118II_DA46DG47:DC-47DT-46_JJ-0.2311.1053.306-1.299-21.11938.2273.4050.1942.412-29.6451.82443.5
1122II_DA50DC51:DG-51DT-50_JJ0.37-1.0743.395-0.1453.76535.419-2.315-0.6263.2666.1670.23735.613
1129II_DA57DG58:DC-58DT-57_JJ1.0380.4012.917-8.6994.34130.1760.047-3.282.5588.07816.18931.669
1131II_DA59DC60:DG-60DT-59_JJ-0.141-0.6413.347-1.6016.31233.375-2.113-0.0173.17910.8622.75533.987
1137II_DA65DT66:DA-66DT-65_JJ-0.357-0.3253.063-1.293-4.64232.1650.1880.4253.09-8.3212.31732.514
1139II_DA67DT68:DA-68DT-67_JJ0.146-0.4583.034-1.1890.04525.296-1.058-0.6533.0230.1042.71425.324
1141II_DA69DT70:DA-70DT-69_JJ0.273-0.583.1910.743.98833.132-1.65-0.3573.1076.96-1.29233.372
11II_DC-71DA-70:DT70DG71_JJ0.231-0.3093.6411.9512.54538.589-0.812-0.0833.6213.843-2.94638.717
18II_DC-64DC-63:DG63DG64_JJ0.0440.3472.9676.1363.49831.3090.0520.9292.9436.38-11.19132.077
19II_DC-63DC-62:DG62DG63_JJ0.453-0.0673.557-2.2388.34741.567-1.013-0.8733.45411.6113.11342.416
110II_DC-62DG-61:DC61DG62_JJ0.0770.3662.976-3.0083.82324.324-0.209-1.0132.9678.9587.04924.798
115II_DC-57DC-56:DG56DG57_JJ0.3041.093.62-1.2813.99137.4191.108-0.6583.76.1981.98937.645
116II_DC-56DG-55:DC55DG56_JJ-0.4192.4823.444-1.136-12.70144.8014.1690.4392.692-16.2771.45646.491
121II_DC-51DC-50:DG50DG51_JJ0.328-0.7713.7163.9767.18333.778-2.5210.1313.49912.14-6.7234.733
122II_DC-50DG-49:DC49DG50_JJ-0.0470.8322.8650.3827.08130.2670.3240.1552.97813.332-0.71931.067
124II_DC-48DT-47:DA47DG48_JJ-0.122-0.0513.561-5.6435.10328.984-1.25-1.0383.4639.9811.03629.945
126II_DC-46DA-45:DT45DG46_JJ-0.4482.2753.551-4.522-2.17937.3273.8290.0633.447-3.3867.02637.651
134II_DC-38DG-37:DC37DG38_JJ-0.9750.6323.2471.4917.23538.0390.0611.6543.26910.974-2.26138.724
140II_DC-32DA-31:DT31DG32_JJ-0.086-0.1693.5256.12512.11430.248-2.4841.2583.15321.883-11.06433.09
143II_DC-29DT-28:DA28DG29_JJ-1.086-0.3263.4121.1693.02929.301-1.3082.3923.3175.964-2.30129.476
145II_DC-27DT-26:DA26DG27_JJ-1.9740.8823.114-0.078-8.89733.032.7943.3482.793-15.3060.13434.175
149II_DC-23DA-22:DT22DG23_JJ-0.76-0.5523.5064.81113.35626.091-3.9442.5172.72827.174-9.7929.644
151II_DC-21DC-20:DG20DG21_JJ-0.976-1.83.64-4.15516.3627.474-6.1521.0252.34731.0147.87732.159
152II_DC-20DG-19:DC19DG20_JJ0.0551.0163.6587.8799.59628.493-0.2661.6753.68718.429-15.13231.029
154II_DC-18DT-17:DA17DG18_JJ-0.3630.1332.8420.3725.62933.537-0.5570.6732.8229.67-0.6433.995
160II_DC-12DG-11:DC11DG12_JJ0.330.423.205-1.63612.08631.933-1.208-0.8233.13421.0342.84734.127
162II_DC-10DA-9:DT9DG10_JJ-0.7530.4923.1282.1641.82830.1850.591.8543.0913.5-4.14330.315
164II_DC-8DG-7:DC7DG8_JJ0.3460.4582.9732.46910.77429.172-1.079-0.2022.9720.487-4.69431.153
168II_DC-4DG-3:DC3DG4_JJ-0.3220.5883.358-4.5966.06640.7120.154-0.0593.4228.6286.53641.387
170II_DC-2DG-1:DC1DG2_JJ-0.3660.4243.226-4.5913.61430.0680.088-0.2163.2726.8858.74630.618
172II_DC0DT1:DA-1DG0_JJ0.321-0.3613.6851.4556.57731.066-2.007-0.2893.54712.101-2.67831.77
176II_DC4DT5:DA-5DG-4_JJ0.1660.8723.559-2.472-5.76638.0062.085-0.5783.379-8.7813.76438.501
179II_DC7DC8:DG-8DG-7_JJ-0.6250.0853.37-10.6197.79432.075-1.139-0.6943.33513.4218.28534.609
180II_DC8DG9:DC-9DG-8_JJ-0.0810.5273.1282.4113.25937.1660.4080.4323.155.094-3.76937.379
182II_DC10DG11:DC-11DG-10_JJ-0.2670.4943.389-4.0016.01537.555-0.043-0.1223.4349.2386.14538.218
190II_DC18DC19:DG-19DG-18_JJ1.186-0.0063.4960.5868.91338.129-1.156-1.6963.42713.419-0.88239.123
191II_DC19DG20:DC-20DG-19_JJ-0.0120.4823.3742.49210.628.752-1.2960.5423.32620.443-4.80730.704
193II_DC21DC22:DG-22DG-21_JJ0.432-0.9523.7786.9353.56631.592-2.4210.6283.6616.428-12.50132.516
194II_DC22DA23:DT-23DG-22_JJ0.209-0.6573.0861.07116.00729.027-3.585-0.2042.41229.284-1.95933.082
196II_DC24DT25:DA-25DG-24_JJ0.3630.0583.2623.1921.10633.11-0.084-0.13.2821.934-5.58233.277
1103II_DC31DG32:DC-32DG-31_JJ-0.1040.2333.6281.1921.73534.9230.0970.3733.632.887-1.98434.984
1105II_DC33DT34:DA-34DG-33_JJ0.839-0.0733.4854.1980.68135.228-0.227-0.7123.5561.121-6.90635.475
1109II_DC37DT38:DA-38DG-37_JJ0.5890.432.903-2.624-3.99933.0321.328-1.4072.779-6.9884.58633.367
1114II_DC42DT43:DA-43DG-42_JJ0.5470.0183.4042.0213.58736.03-0.497-0.5833.4155.776-3.25536.256
1116II_DC44DC45:DG-45DG-44_JJ-0.5160.3683.3862.447-7.0631.0321.9761.3913.179-12.961-4.49331.897
1117II_DC45DA46:DT-46DG-45_JJ-0.4531.1862.8461.541-11.19239.4012.7030.7872.416-16.2-2.2340.926
1121II_DC49DA50:DT-50DG-49_JJ-0.8410.1912.9844.936-3.44430.5090.9432.4112.779-6.465-9.26731.083
1123II_DC51DG52:DC-52DG-51_JJ0.3680.2073.132-2.156.52332.882-0.669-0.9753.08511.373.74733.572
1132II_DC60DC61:DG-61DG-60_JJ0.637-0.2732.9758.45110.44525.574-2.7090.472.73121.784-17.62528.836
1133II_DC61DG62:DC-62DG-61_JJ-0.9351.6893.405-5.798.65733.0731.330.5633.81914.7589.8734.63
1136II_DC64DA65:DT-65DG-64_JJ0.0790.0663.6343.0424.44638.492-0.5030.2933.6156.704-4.58638.853
111II_DG-61DG-60:DC60DC61_JJ-0.324-0.6173.4883.1518.04836.958-2.0250.9193.2512.486-4.88837.921
112II_DG-60DT-59:DA59DC60_JJ-0.175-0.3733.7281.2536.72232.577-1.9180.5413.57311.821-2.20333.268
114II_DG-58DC-57:DG57DC58_JJ-0.630.5132.953-7.4191.53135.7680.6220.0573.0372.45911.91636.535
117II_DG-55DA-54:DT54DC55_JJ-0.1162.0733.114-5.307-14.18344.9553.581-0.2292.39-17.9566.71947.311
119II_DG-53DG-52:DC52DC53_JJ0.1940.2833.824-1.6849.28435.953-1.018-0.573.76714.732.67137.13
120II_DG-52DC-51:DG51DC52_JJ-1.225-0.3953.426-3.7394.56634.791-1.371.4353.4577.5696.19735.273
123II_DG-49DC-48:DG48DC49_JJ-0.2380.0313.508-3.9761.42941.603-0.118-0.1153.5142.0065.5841.808
131II_DG-41DG-40:DC40DC41_JJ-0.2920.0883.625-3.67420.2633.218-2.648-0.0673.18131.9145.78838.928
132II_DG-40DT-39:DA39DC40_JJ0.033-0.4013.372-8.2860.67434.512-0.76-1.3053.2691.11613.7235.469
135II_DG-37DT-36:DA36DC37_JJ-0.261-0.1793.548-6.9182.37529.722-0.853-1.0013.4944.54313.23530.589
138II_DG-34DA-33:DT33DC34_JJ-0.7930.5592.592-14.60.94840.2620.688-0.1392.721.32620.41342.734
142II_DG-30DC-29:DG29DC30_JJ0.83-0.8073.720.5937.2437.844-2.227-1.1763.52411.039-0.90538.51
148II_DG-24DC-23:DG23DC24_JJ0.363-0.6662.992-1.6370.92736.268-1.187-0.792.9561.4882.62736.315
153II_DG-19DC-18:DG18DC19_JJ-0.9110.1393.143-7.0470.47733.2040.1630.4413.2640.82312.16133.926
161II_DG-11DC-10:DG10DC11_JJ-0.325-0.3143.409-3.8886.38434.944-1.471-0.0553.31810.4836.38435.71
165II_DG-7DT-6:DA6DC7_JJ-1.2921.1793.1210.261-12.67443.9892.5231.6852.692-16.517-0.3445.692
169II_DG-3DC-2:DG2DC3_JJ0.941-0.1063.3117.967-1.15834.6520.004-0.3253.438-1.912-13.15735.547
171II_DG-1DC0:DG0DC1_JJ-0.419-1.0983.6865.1128.96237.184-2.8641.323.26113.733-7.83338.54
174II_DG2DT3:DA-3DC-2_JJ-0.748-0.3293.296-8.889-1.91332.552-0.244-0.2133.391-3.33215.48633.765
181II_DG9DC10:DG-10DC-9_JJ0.079-0.5563.4661.7856.8427.745-2.7380.2613.23713.978-3.64828.615
183II_DG11DT12:DA-12DC-11_JJ0.011-0.5423.3915.036.42831.75-2.0930.8663.18811.513-9.00832.757
192II_DG20DC21:DG-21DC-20_JJ1.01-0.6343.253-3.1841.83731.521-1.488-2.4173.0983.3675.83731.729
199II_DG27DA28:DT-28DC-27_JJ-1.2060.7243.355-1.4695.6136.4120.3461.6983.4698.9072.33336.855
1102II_DG30DC31:DG-31DC-30_JJ0.054-0.9023.3610.17914.55735.317-3.187-0.062.78922.833-0.28138.111
1104II_DG32DC33:DG-33DC-32_JJ-0.193-0.2223.394-6.8081.50136.154-0.564-0.6593.3622.39210.84636.798
1112II_DG40DT41:DA-41DC-40_JJ-0.462-0.6243.04-2.90910.67931.604-2.6870.3672.72318.8975.14833.439
1119II_DG47DG48:DC-48DC-47_JJ0.1060.4753.9057.7746.80235.844-0.3511.0853.86710.778-12.31937.256
1120II_DG48DC49:DG-49DC-48_JJ-0.068-0.1433.599-12.7194.99641.934-0.711-1.2363.4416.76817.23144.009
1124II_DG52DT53:DA-53DC-52_JJ0.444-0.6383.5025.2786.36436.237-1.9070.0533.37510.071-8.35337.137
1126II_DG54DT55:DA-55DC-54_JJ-0.0981.0362.9622.794-4.38739.3671.9790.4332.822-6.477-4.12539.695
1128II_DG56DA57:DT-57DC-56_JJ-0.741.8393.8494.4430.99143.9752.3351.473.7991.319-5.91544.198
1130II_DG58DA59:DT-59DC-58_JJ-0.8910.393.096-0.972-2.44537.7840.8981.2553.087-3.7711.49937.872
1134II_DG62DG63:DC-63DC-62_JJ0.4930.6923.1212.17412.14932.631-0.691-0.4943.19520.722-3.70834.828
1135II_DG63DC64:DG-64DC-63_JJ-0.025-0.23.401-6.456-3.79237.9630.185-0.793.364-5.769.80738.668
13II_DT-69DA-68:DT68DA69_JJ-0.1230.8163.636-1.308-3.14140.521.5590.0173.568-4.5251.88540.656
15II_DT-67DA-66:DT66DA67_JJ-0.3420.1863.544-0.822-2.35740.6040.5510.3933.534-3.3931.18440.678
17II_DT-65DC-64:DG64DA65_JJ0.676-0.7653.567-3.5731.41141.091-1.249-1.3743.4722.0055.07741.263
113II_DT-59DG-58:DC58DA59_JJ0.7670.9873.4918.6794.82537.3570.8290.0323.6687.375-13.26538.609
125II_DT-47DC-46:DG46DA47_JJ-0.0232.2333.3875.699-14.18151.5013.3270.3672.713-15.924-6.453.572
129II_DT-43DT-42:DA42DA43_JJ1.0270.5182.9835.2924.40436.8440.262-0.9443.1356.893-8.28337.46
130II_DT-42DG-41:DC41DA42_JJ0.481.283.8882.78821.19419.606-3.926-0.1073.62547.536-6.25428.928
133II_DT-39DC-38:DG38DA39_JJ0.5410.233.2172.2792.73135.173-0.02-0.5583.2534.505-3.75935.347
136II_DT-36DA-35:DT35DA36_JJ-1.3391.8033.296-4.69-19.44545.8773.4591.272.504-23.6675.70949.831
144II_DT-28DC-27:DG27DA28_JJ1.0821.2873.0357.421-4.52340.8112.255-0.7873.025-6.398-10.49941.687
146II_DT-26DA-25:DT25DA26_JJ1.9731.4553.4883.641-5.87641.3892.683-2.3543.413-8.244-5.10941.937
155II_DT-17DT-16:DA16DA17_JJ1.2330.7273.2764.943-8.91137.5152.183-1.2513.16-13.552-7.51738.827
156II_DT-16DA-15:DT15DA16_JJ-0.0110.773.156-0.768-7.03934.8482.23-0.0872.949-11.6051.26635.539
166II_DT-6DA-5:DT5DA6_JJ0.4312.2413.7681.049-7.74343.9883.729-0.4613.356-10.241-1.38844.643
173II_DT1DG2:DC-2DA-1_JJ0.00.1563.357-1.57310.5133.341-1.385-0.2463.25317.7662.6634.948
175II_DT3DC4:DG-4DA-3_JJ0.3480.2112.8119.40.57235.8540.2650.5562.8130.909-14.95437.031
177II_DT5DA6:DT-6DA-5_JJ-0.4461.9183.7192.968-5.54743.9743.1030.8933.429-7.363-3.9444.4
184II_DT12DT13:DA-13DA-12_JJ0.13-0.2263.321-0.511-3.5336.6580.13-0.2773.326-5.5960.8136.825
185II_DT13DT14:DA-14DA-13_JJ0.038-0.4683.351.7471.2539.421-0.8440.1553.3331.851-2.58839.477
186II_DT14DT15:DA-15DA-14_JJ-0.203-0.1523.412-0.2350.09437.59-0.2480.2833.4130.1460.36437.59
187II_DT15DA16:DT-16DA-15_JJ0.3161.5073.2830.144-8.40636.7673.373-0.4722.883-13.117-0.22537.683
197II_DT25DA26:DT-26DA-25_JJ-1.2861.3423.281-0.944-8.10236.9123.0821.8682.962-12.6081.46837.772
1106II_DT34DT35:DA-35DA-34_JJ-1.2480.32.9585.14511.44731.261-1.1522.9082.66920.25-9.10233.628
1107II_DT35DA36:DT-36DA-35_JJ-1.1352.4943.709-7.877-12.23850.1583.7180.7273.193-14.0979.07452.095
1110II_DT38DA39:DT-39DA-38_JJ-0.1711.0643.1343.560.92936.7891.5580.733.131.467-5.62436.966
1113II_DT41DC42:DG-42DA-41_JJ-0.176-0.4123.632-4.13511.76830.388-2.944-0.4673.2521.3547.50332.792
1115II_DT43DC44:DG-44DA-43_JJ0.9960.3233.577-5.5340.30344.3270.396-1.8563.4370.47.344.655
1125II_DT53DG54:DC-54DA-53_JJ-0.2871.4632.9060.6866.13130.5881.6340.6563.12611.476-1.28431.189
1127II_DT55DG56:DC-56DA-55_JJ0.2412.4613.649-3.029-10.49344.7264.086-0.5793.008-13.5513.91245.973
1138II_DT66DA67:DT-67DA-66_JJ0.4130.3093.5080.344-2.97942.40.75-0.5333.482-4.113-0.47642.501
1140II_DT68DA69:DT-69DA-68_JJ-0.3720.1813.1534.192-1.04542.1670.3530.9243.099-1.449-5.80942.377
1142II_DT70DG71:DC-71DA-70_JJ-0.281-0.4623.318-8.6844.74232.543-1.563-0.9333.1898.22815.06733.975

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.