A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
Search for released structures

NDB ID: 6K1I  PDB ID: 6K1I 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12I_DA-70:DT70_J-0.308-0.03-0.073-10.811-10.7242.906
14I_DA-68:DT68_J0.301-0.245-0.06-7.92-10.0490.691
16I_DA-66:DT66_J-0.217-0.038-0.034-2.929-13.81-2.261
118I_DA-54:DT54_J-0.082-0.417-0.0091.983-13.9691.998
127I_DA-45:DT45_J-0.613-0.141-0.567-13.792-14.611-1.7
128I_DA-44:DT44_J0.091-0.053-0.182-3.07-23.8911.302
137I_DA-35:DT35_J-0.158-0.2620.228-14.953-29.741-6.179
139I_DA-33:DT33_J-0.276-0.2610.567-1.307-9.985-6.258
141I_DA-31:DT31_J-0.396-0.2340.031-3.864-9.873-2.5
147I_DA-25:DT25_J-0.335-0.042-0.367-15.8084.2442.265
150I_DA-22:DT22_J0.069-0.009-0.802-10.551-7.426-4.963
157I_DA-15:DT15_J0.201-0.1860.17313.493-17.423-2.755
158I_DA-14:DT14_J-0.301-0.1780.35710.599-18.3480.197
159I_DA-13:DT13_J-0.04-0.2280.77812.905-11.6811.299
163I_DA-9:DT9_J0.596-0.178-0.3380.272-7.372-2.67
167I_DA-5:DT5_J-0.328-0.2240.326-2.994-17.561-6.466
178I_DA6:DT-6_J-0.056-0.1370.134-7.574-30.569-3.494
188I_DA16:DT-16_J0.019-0.11-0.297-1.591-1.660.38
189I_DA17:DT-17_J-0.297-0.0510.5163.616-16.878-3.163
195I_DA23:DT-23_J-0.382-0.250.573-2.987-3.3110.739
198I_DA26:DT-26_J0.07-0.110.554.489-37.3923.682
1100I_DA28:DT-28_J-0.108-0.069-0.2160.297-23.4630.803
1101I_DA29:DT-29_J0.5430.04-0.0988.56-8.511-2.386
1108I_DA36:DT-36_J-0.304-0.1040.008-15.863-21.294-8.395
1111I_DA39:DT-39_J0.363-0.039-0.2588.943-18.6616.207
1118I_DA46:DT-46_J0.287-0.270.4232.436-3.783-7.588
1122I_DA50:DT-50_J-0.068-0.1070.2560.621-14.443-4.321
1129I_DA57:DT-57_J-0.148-0.231-0.032-13.499-11.214-5.764
1131I_DA59:DT-59_J-0.228-0.0730.3310.72-16.94.498
1137I_DA65:DT-65_J0.337-0.050.331-9.321-9.786.136
1139I_DA67:DT-67_J-0.176-0.188-0.052-3.093-9.5636.423
1141I_DA69:DT-69_J0.169-0.125-0.2480.31-11.139-3.019
11I_DC-71:DG71_J-0.3350.11-0.044-4.156-12.7892.673
18I_DC-64:DG64_J0.006-0.0880.0126.565-12.044-1.613
19I_DC-63:DG63_J1.082-0.3010.384-0.441-9.453-1.739
110I_DC-62:DG62_J0.405-0.2240.591-15.505-11.0774.101
115I_DC-57:DG57_J-0.2150.0340.306-2.96-16.2631.467
116I_DC-56:DG56_J0.063-0.080.213-2.893-8.6221.144
121I_DC-51:DG51_J-0.068-0.299-0.0520.493-1.272-5.414
122I_DC-50:DG50_J0.557-0.0940.107-10.97-9.351.016
124I_DC-48:DG48_J0.07-0.110.406-1.987-7.776-4.816
126I_DC-46:DG46_J0.289-0.0830.484-6.948-25.9086.154
134I_DC-38:DG38_J0.213-0.0820.317-13.091-6.3541.595
140I_DC-32:DG32_J0.045-0.066-0.055-0.694-8.433-0.832
143I_DC-29:DG29_J-0.4650.1040.694-21.8016.5380.198
145I_DC-27:DG27_J0.349-0.1240.52-15.536-1.8520.929
149I_DC-23:DG23_J0.2030.1940.627-7.156-5.6111.836
151I_DC-21:DG21_J-0.083-0.243-0.5314.148-10.854-0.461
152I_DC-20:DG20_J0.095-0.0570.133-18.807-3.358-2.295
154I_DC-18:DG18_J0.296-0.143-0.114-2.614-19.9872.845
160I_DC-12:DG12_J0.272-0.204-0.112-3.59-15.541-2.599
162I_DC-10:DG10_J0.296-0.1040.301-2.851-1.6671.835
164I_DC-8:DG8_J0.013-0.0330.532-4.699-3.2513.231
168I_DC-4:DG4_J0.034-0.2050.2288.096-7.5190.199
170I_DC-2:DG2_J0.191-0.138-0.33715.364-15.0960.702
172I_DC0:DG0_J0.121-0.3410.180.2480.324-4.561
176I_DC4:DG-4_J-0.264-0.268-0.2617.691-7.539-6.076
179I_DC7:DG-7_J0.084-0.128-0.261-2.144-3.62-3.198
180I_DC8:DG-8_J-0.348-0.2080.29-1.8990.382-3.601
182I_DC10:DG-10_J-0.107-0.3050.023-1.841-1.446-3.524
190I_DC18:DG-18_J0.395-0.251-0.0728.983-6.516-9.501
191I_DC19:DG-19_J-0.045-0.1740.005-4.629-5.735-1.727
193I_DC21:DG-21_J0.582-0.36-0.2843.224-9.4111.115
194I_DC22:DG-22_J0.125-0.122-0.015-10.597-17.9063.466
196I_DC24:DG-24_J0.437-0.163-0.05-1.402-8.4743.663
1103I_DC31:DG-31_J0.408-0.0830.0857.342-22.6281.059
1105I_DC33:DG-33_J0.022-0.0940.633-8.153-5.3562.109
1109I_DC37:DG-37_J-0.053-0.2170.464-20.089-3.577-4.481
1114I_DC42:DG-42_J-0.083-0.132-0.76310.507-13.5541.482
1116I_DC44:DG-44_J-0.639-0.2081.744-20.025-1.855-0.962
1117I_DC45:DG-45_J-0.2290.190.924-13.647-10.9220.978
1121I_DC49:DG-49_J0.286-0.2330.853-15.902-11.0271.876
1123I_DC51:DG-51_J-0.123-0.0310.343-4.03-10.202-0.709
1132I_DC60:DG-60_J0.047-0.0440.258-0.009-14.243-4.383
1133I_DC61:DG-61_J-0.0530.032-0.3510.294-15.844-0.807
1136I_DC64:DG-64_J0.467-0.3610.346-1.207-15.410.278
111I_DG-61:DC61_J-0.149-0.0310.2888.595-6.931-1.524
112I_DG-60:DC60_J-0.26-0.041-0.712-15.047-16.4543.779
114I_DG-58:DC58_J-0.412-0.215-0.262-17.071-11.117-0.478
117I_DG-55:DC55_J-0.351-0.078-0.244-18.162-31.8787.005
119I_DG-53:DC53_J0.160.071-0.00312.172-5.8-0.176
120I_DG-52:DC52_J0.243-0.065-0.3611.81-16.6453.297
123I_DG-49:DC49_J-0.521-0.2070.2628.898-11.912-4.833
131I_DG-41:DC41_J-0.141-0.234-1.007-1.958-10.1973.49
132I_DG-40:DC40_J-0.021-0.012-0.677-7.259-1.905-3.533
135I_DG-37:DC37_J-0.216-0.098-0.409-8.309-5.854-3.525
138I_DG-34:DC34_J-0.488-0.213-1.612-30.924-23.706-0.832
142I_DG-30:DC30_J-0.346-0.3110.135-0.83-11.025-4.407
148I_DG-24:DC24_J-0.732-0.1470.097-7.788-10.4342.622
153I_DG-19:DC19_J0.0280.103-0.405-11.826-23.6945.621
161I_DG-11:DC11_J-0.119-0.151-0.054-2.709-7.3951.984
165I_DG-7:DC7_J-0.131-0.0410.15618.803-12.6987.853
169I_DG-3:DC3_J-0.1050.0530.72516.743-0.948-0.95
171I_DG-1:DC1_J-0.261-0.0850.29716.516-9.4551.435
174I_DG2:DC-2_J-0.2910.014-0.728-15.613-13.9230.866
181I_DG9:DC-9_J0.265-0.090.1558.028-10.3091.94
183I_DG11:DC-11_J-0.296-0.2590.284-0.239-2.66-1.395
192I_DG20:DC-20_J-0.334-0.230.258.6810.065-5.105
199I_DG27:DC-27_J-0.4170.0080.369.05313.8964.713
1102I_DG30:DC-30_J-0.065-0.042-0.1099.7621.234-1.712
1104I_DG32:DC-32_J-0.586-0.180.165-4.263-3.672-0.113
1112I_DG40:DC-40_J-0.456-0.347-0.767-4.521-18.9633.577
1119I_DG47:DC-47_J-0.824-0.4281.2264.929-9.279-3.938
1120I_DG48:DC-48_J-0.412-0.148-0.732-16.005-17.131-3.975
1124I_DG52:DC-52_J-0.177-0.3360.3660.416-9.639-2.625
1126I_DG54:DC-54_J-0.1580.12-0.754-3.974-7.7852.606
1128I_DG56:DC-56_J-0.266-0.2020.4330.01-12.402-0.723
1130I_DG58:DC-58_J-0.543-0.0940.6065.175-10.0816.649
1134I_DG62:DC-62_J-0.165-0.206-0.2921.588-13.2531.967
1135I_DG63:DC-63_J-0.049-0.215-0.4223.15-15.861-1.405
1143I_DG71:DC-71_J0.2780.0960.54317.07-14.431-12.502
13I_DT-69:DA69_J-0.057-0.1760.092-4.415-10.758-1.136
15I_DT-67:DA67_J0.158-0.270.0882.766-12.427-2.486
17I_DT-65:DA65_J-0.052-0.176-0.0098.9-7.591-7.316
113I_DT-59:DA59_J0.063-0.2230.471-10.903-19.38-0.922
125I_DT-47:DA47_J0.305-0.3170.969-2.391-13.094-0.701
129I_DT-43:DA43_J-0.7340.1-0.672-1.814-18.921-14.569
130I_DT-42:DA42_J-0.613-0.205-0.9173.208-5.833-4.654
133I_DT-39:DA39_J-0.395-0.2220.843-19.381-9.610.961
136I_DT-36:DA36_J-0.264-0.190.652-15.636-14.581-3.478
144I_DT-28:DA28_J0.106-0.030.712-24.102-14.8851.257
146I_DT-26:DA26_J-0.733-0.1660.639-14.862-35.513-7.32
155I_DT-17:DA17_J0.172-0.1470.1072.967-18.969-7.997
156I_DT-16:DA16_J0.161-0.1420.011-0.271-6.49-2.249
166I_DT-6:DA6_J0.07-0.3470.02815.169-33.564-6.693
173I_DT1:DA-1_J-0.128-0.249-0.299-11.758-15.759-2.806
175I_DT3:DA-3_J-0.053-0.0980.58-6.222-11.046-3.775
177I_DT5:DA-5_J0.058-0.223-0.7456.459-14.372-7.227
184I_DT12:DA-12_J-0.447-0.3620.209-1.088-9.6810.776
185I_DT13:DA-13_J0.163-0.180.276-3.708-15.497-1.818
186I_DT14:DA-14_J0.365-0.1290.464-9.065-16.331-0.036
187I_DT15:DA-15_J0.309-0.0560.873-20.944-15.484-5.379
197I_DT25:DA-25_J0.248-0.1690.189-0.7960.783-2.209
1106I_DT34:DA-34_J0.203-0.1280.891-17.675-6.9063.491
1107I_DT35:DA-35_J-0.042-0.2591.01-10.475-6.3870.391
1110I_DT38:DA-38_J-0.567-0.023-0.1174.362-13.478-1.345
1113I_DT41:DA-41_J-0.046-0.243-0.6061.357-9.346-4.219
1115I_DT43:DA-43_J-0.622-0.165-0.154-12.251-17.9392.135
1125I_DT53:DA-53_J-0.673-0.058-0.348-14.844-14.3156.077
1127I_DT55:DA-55_J-0.016-0.174-0.16912.309-19.198-0.333
1138I_DT66:DA-66_J0.118-0.194-0.141-2.423-8.6792.957
1140I_DT68:DA-68_J-0.155-0.270.1354.757-2.5463.285
1142I_DT70:DA-70_J0.134-0.206-0.328.233-6.554-0.272

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.