A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 5-Aug-2020 number of released structures: 10886
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NDB ID: 6KQF  PDB ID: 6KQF 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18G_DA13:DT15_H-0.758-0.1491.78926.048-12.10312.76
112G_DA18:U2_I0.634-0.1060.082-1.735-3.95313.104
12G_DC5:DG23_H-0.046-0.4940.73-14.023-9.191-2.201
14G_DC8:DG20_H-0.8791.0471.097-3.58-11.96938.223
15G_DC9:DG19_H0.8990.6441.153-12.831-10.26627.05
110G_DC16:G4_I0.117-0.2250.13716.51-15.1846.072
11G_DG4:DC24_H0.634-0.0531.0898.845-2.531-7.404
17G_DG12:DC16_H-1.6770.2291.82124.149-19.30627.241
111G_DG17:C3_I-0.053-0.1550.0221.012-10.1937.259
113G_DG19:C1_I0.791-0.07-0.204-6.018-20.0059.975
13G_DT7:DA21_H0.9710.3120.334-11.196-32.7789.784
16G_DT11:DA17_H0.0510.9871.0328.165-5.3838.974
19G_DT15:A5_I0.545-0.390.9049.114-9.67914.981

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.